warning: line 1 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" does not begin with "##gff-version" or "##gvf-version", create "##gff-version 3" line automatically
warning: seqid "Porites_evermani_scaffold_1" on line 1 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_10" on line 2233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_100" on line 3293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1000" on line 3909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1001" on line 4165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1002" on line 4341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1003" on line 4361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1004" on line 4603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1005" on line 4675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1006" on line 4801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1007" on line 4847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1008" on line 5027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1009" on line 5047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_101" on line 5135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1010" on line 5889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1011" on line 6115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1012" on line 6285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1013" on line 6401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1014" on line 6463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1015" on line 6625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1016" on line 6807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1017" on line 6867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1018" on line 6987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1019" on line 7197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_102" on line 7405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1020" on line 7775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1021" on line 7939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1022" on line 8135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1023" on line 8277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1024" on line 8365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1025" on line 8463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1026" on line 8565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1027" on line 8813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1028" on line 8967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1029" on line 9047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_103" on line 9141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1030" on line 9779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1031" on line 9929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1032" on line 10189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1033" on line 10245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1034" on line 10323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1035" on line 10357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1036" on line 10653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1037" on line 10697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1038" on line 10773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1039" on line 10963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_104" on line 11127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1040" on line 11523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1041" on line 11643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1042" on line 11757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1043" on line 11933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1044" on line 12077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1045" on line 12199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1046" on line 12311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1047" on line 12531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1048" on line 12623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1049" on line 12727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_105" on line 12835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1050" on line 13177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1051" on line 13245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1052" on line 13393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1053" on line 13545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1054" on line 13783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1055" on line 13905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1056" on line 14173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1057" on line 14227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1058" on line 14385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1059" on line 14527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_106" on line 14781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1060" on line 15233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1061" on line 15441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1062" on line 15487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1063" on line 15551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1064" on line 15819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1065" on line 16025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1066" on line 16253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1067" on line 16339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1068" on line 16487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1069" on line 16653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_107" on line 16727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1070" on line 17291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1071" on line 17489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1072" on line 17683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1073" on line 17805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1074" on line 17867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1075" on line 18111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1076" on line 18197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1077" on line 18311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1078" on line 18409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1079" on line 18445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_108" on line 18595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1080" on line 19367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1081" on line 19507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1082" on line 19623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1083" on line 19839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1084" on line 20031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1085" on line 20109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1086" on line 20265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1087" on line 20465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1088" on line 20697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1089" on line 20713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_109" on line 20817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1090" on line 21375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1091" on line 21465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1092" on line 21639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1093" on line 21825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1094" on line 21849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1095" on line 22029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1096" on line 22357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1097" on line 22479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1098" on line 22641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1099" on line 22779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_11" on line 22875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_110" on line 24195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1100" on line 24989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1101" on line 25115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1102" on line 25305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1103" on line 25473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1104" on line 25627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1105" on line 25849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1106" on line 26043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1107" on line 26153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1108" on line 26239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1109" on line 26511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_111" on line 26665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1110" on line 27133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1111" on line 27295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1112" on line 27465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1113" on line 27569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1114" on line 27803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1115" on line 27893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1116" on line 28037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1117" on line 28221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1118" on line 28277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1119" on line 28369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_112" on line 28519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1120" on line 28949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1121" on line 28999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1122" on line 29083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1123" on line 29309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1124" on line 29393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1125" on line 29605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1126" on line 29755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1127" on line 29839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1128" on line 29953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1129" on line 30141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_113" on line 30281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1130" on line 30847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1131" on line 31053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1132" on line 31161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1133" on line 31221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1134" on line 31419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1135" on line 31589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1136" on line 31751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1137" on line 31915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1138" on line 32011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1139" on line 32113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_114" on line 32203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1140" on line 32945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1141" on line 33019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1142" on line 33179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1143" on line 33393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1144" on line 33537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1145" on line 33663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1146" on line 33749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1147" on line 33833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1148" on line 34053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1149" on line 34243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_115" on line 34341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1150" on line 34807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1151" on line 34933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1152" on line 35019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1153" on line 35227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1154" on line 35305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1155" on line 35387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1156" on line 35449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1157" on line 35575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1158" on line 35767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1159" on line 35889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_116" on line 36083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1160" on line 36413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1161" on line 36503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1162" on line 36661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1163" on line 36835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1164" on line 37039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1165" on line 37245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1166" on line 37411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1167" on line 37463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1168" on line 37489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1169" on line 37595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_117" on line 37775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1170" on line 38243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1171" on line 38431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1172" on line 38577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1173" on line 38673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1174" on line 38905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1175" on line 39035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1176" on line 39277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1177" on line 39321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1178" on line 39427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1179" on line 39611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_118" on line 39697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1180" on line 40099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1181" on line 40181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1182" on line 40339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1183" on line 40497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1184" on line 40617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1185" on line 40767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1186" on line 40827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1187" on line 40969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1188" on line 41103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1189" on line 41257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_119" on line 41379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1190" on line 41781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1191" on line 41881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1192" on line 42213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1193" on line 42337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1194" on line 42467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1195" on line 42609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1196" on line 42737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1197" on line 42799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1198" on line 42889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1199" on line 43021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_12" on line 43073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_120" on line 44231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1200" on line 44617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1201" on line 44665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1202" on line 44745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1203" on line 44995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1204" on line 45025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1205" on line 45159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1206" on line 45327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1207" on line 45429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1208" on line 45587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1209" on line 45613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_121" on line 45805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1210" on line 46541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1211" on line 46717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1212" on line 46803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1213" on line 46979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1214" on line 47185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1215" on line 47277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1216" on line 47445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1217" on line 47591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1218" on line 47759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1219" on line 47831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_122" on line 47877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1220" on line 48187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1221" on line 48367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1222" on line 48511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1223" on line 48653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1224" on line 48711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1225" on line 48865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1226" on line 48973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1227" on line 49151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1228" on line 49223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1229" on line 49335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_123" on line 49385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1230" on line 49859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1231" on line 49991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1232" on line 50087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1233" on line 50151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1234" on line 50221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1235" on line 50311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1236" on line 50443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1237" on line 50537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1238" on line 50715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1239" on line 50755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_124" on line 50995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1240" on line 51463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1241" on line 51585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1242" on line 51749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1243" on line 51893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1244" on line 52147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1245" on line 52233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1246" on line 52279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1247" on line 52333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1248" on line 52399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1249" on line 52523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_125" on line 52605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1250" on line 53013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1251" on line 53071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1252" on line 53137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1253" on line 53319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1254" on line 53377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1255" on line 53581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1256" on line 53683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1257" on line 53823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1258" on line 54005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1259" on line 54157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_126" on line 54333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1260" on line 54611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1261" on line 54769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1262" on line 54969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1263" on line 55093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1264" on line 55173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1265" on line 55335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1266" on line 55447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1267" on line 55541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1268" on line 55717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1269" on line 55859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_127" on line 55973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1270" on line 56829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1271" on line 56901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1272" on line 57109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1273" on line 57279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1274" on line 57393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1275" on line 57619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1276" on line 57743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1277" on line 57813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1278" on line 57963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1279" on line 58135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_128" on line 58169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1280" on line 58731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1281" on line 58905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1282" on line 59109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1283" on line 59363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1284" on line 59611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1285" on line 59733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1286" on line 59785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1287" on line 59897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1288" on line 59981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1289" on line 60067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_129" on line 60141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1290" on line 60433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1291" on line 60485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1292" on line 60673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1293" on line 60741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1294" on line 60781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1295" on line 60945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1296" on line 61071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1297" on line 61309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1298" on line 61385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1299" on line 61521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_13" on line 61619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_130" on line 62883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1300" on line 63447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1301" on line 63595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1302" on line 63627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1303" on line 63777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1304" on line 63941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1305" on line 64025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1306" on line 64107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1307" on line 64181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1308" on line 64281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1309" on line 64555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_131" on line 64749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1310" on line 65207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1311" on line 65433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1312" on line 65549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1313" on line 65675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1314" on line 66069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1315" on line 66171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1316" on line 66313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1317" on line 66377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1318" on line 66513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1319" on line 66663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_132" on line 66877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1320" on line 67401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1321" on line 67425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1322" on line 67545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1323" on line 67737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1324" on line 67839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1325" on line 67939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1326" on line 67999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1327" on line 68147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1328" on line 68287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1329" on line 68415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_133" on line 68477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1330" on line 68901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1331" on line 69035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1332" on line 69081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1333" on line 69149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1334" on line 69253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1335" on line 69435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1336" on line 69519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1337" on line 69575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1338" on line 69623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1339" on line 69697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_134" on line 69823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1340" on line 70245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1341" on line 70397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1342" on line 70505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1343" on line 70621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1344" on line 70779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1345" on line 71015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1346" on line 71077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1347" on line 71223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1348" on line 71321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1349" on line 71441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_135" on line 71549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1350" on line 71851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1351" on line 71955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1352" on line 72069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1353" on line 72165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1354" on line 72233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1355" on line 72305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1356" on line 72611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1357" on line 72805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1358" on line 72909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1359" on line 73045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_136" on line 73137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1360" on line 73427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1361" on line 73535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1362" on line 73659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1363" on line 73789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1364" on line 73857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1365" on line 73999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1366" on line 74067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1367" on line 74301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1368" on line 74367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1369" on line 74425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_137" on line 74583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1370" on line 75027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1371" on line 75081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1372" on line 75189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1373" on line 75219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1374" on line 75313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1375" on line 75397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1376" on line 75555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1377" on line 75609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1378" on line 75665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1379" on line 75767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_138" on line 75837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1380" on line 76137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1381" on line 76193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1382" on line 76349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1383" on line 76489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1384" on line 76549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1385" on line 76787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1386" on line 76865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1387" on line 77041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1388" on line 77229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1389" on line 77325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_139" on line 77365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1390" on line 77539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1391" on line 77651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1392" on line 77705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1393" on line 77817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1394" on line 77977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1395" on line 78051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1396" on line 78193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1397" on line 78437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1398" on line 78571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1399" on line 78627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_14" on line 78893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_140" on line 79937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1400" on line 80819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1401" on line 80865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1402" on line 81053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1403" on line 81165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1404" on line 81213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1405" on line 81371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1406" on line 81433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1407" on line 81481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1408" on line 81553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1409" on line 81711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_141" on line 81783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1410" on line 82011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1411" on line 82123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1412" on line 82411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1413" on line 82505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1414" on line 82549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1415" on line 82695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1416" on line 82907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1417" on line 83135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1418" on line 83251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1419" on line 83357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_142" on line 83471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1420" on line 83971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1421" on line 84195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1422" on line 84285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1423" on line 84383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1424" on line 84519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1425" on line 84593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1426" on line 84645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1427" on line 84819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1428" on line 84923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1429" on line 84969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_143" on line 85171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1430" on line 85515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1431" on line 85587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1432" on line 85681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1433" on line 85827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1434" on line 85935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1435" on line 86015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1436" on line 86053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1437" on line 86121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1438" on line 86225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1439" on line 86313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_144" on line 86475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1440" on line 86909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1441" on line 87019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1442" on line 87141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1443" on line 87285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1444" on line 87501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1445" on line 87621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1446" on line 87785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1447" on line 87935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1448" on line 87991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1449" on line 88127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_145" on line 88163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1450" on line 88587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1451" on line 88681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1452" on line 88853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1453" on line 88971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1454" on line 89141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1455" on line 89231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1456" on line 89341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1457" on line 89489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1458" on line 89577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1459" on line 89669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_146" on line 89791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1460" on line 90301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1461" on line 90341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1462" on line 90501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1463" on line 90567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1464" on line 90653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1465" on line 90829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1466" on line 90905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1467" on line 91003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1468" on line 91105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1469" on line 91219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_147" on line 91337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1470" on line 91747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1471" on line 91807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1472" on line 91877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1473" on line 92055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1474" on line 92153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1475" on line 92265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1476" on line 92313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1477" on line 92373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1478" on line 92611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1479" on line 92715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_148" on line 92823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1480" on line 93339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1481" on line 93429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1482" on line 93527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1483" on line 93629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1484" on line 93751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1485" on line 93913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1486" on line 94039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1487" on line 94187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1488" on line 94383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1489" on line 94557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_149" on line 94609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1490" on line 94933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1491" on line 95003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1492" on line 95105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1493" on line 95285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1494" on line 95407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1495" on line 95455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1496" on line 95501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1497" on line 95641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1498" on line 95843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1499" on line 95913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_15" on line 96001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_150" on line 97429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1500" on line 97883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1501" on line 97975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1502" on line 98019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1503" on line 98077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1504" on line 98199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1505" on line 98287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1506" on line 98377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1507" on line 98541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1508" on line 98629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1509" on line 98677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_151" on line 98887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1510" on line 99073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1511" on line 99225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1512" on line 99369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1513" on line 99467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1514" on line 99583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1515" on line 99663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1516" on line 99709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1517" on line 99869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1518" on line 100043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1519" on line 100165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_152" on line 100297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1520" on line 100691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1521" on line 100765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1522" on line 100801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1523" on line 100931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1524" on line 101005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1525" on line 101077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1526" on line 101233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1527" on line 101323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1528" on line 101359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1529" on line 101613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_153" on line 101683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1530" on line 102223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1531" on line 102367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1532" on line 102437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1533" on line 102643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1534" on line 102831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1535" on line 102997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1536" on line 103093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1537" on line 103175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1538" on line 103215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1539" on line 103245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_154" on line 103383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1540" on line 103963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1541" on line 104051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1542" on line 104077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1543" on line 104171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1544" on line 104313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1545" on line 104471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1546" on line 104671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1547" on line 104769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1548" on line 104925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1549" on line 105049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_155" on line 105207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1550" on line 105773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1551" on line 105915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1552" on line 106007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1553" on line 106039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1554" on line 106097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1555" on line 106163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1556" on line 106237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1557" on line 106317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1558" on line 106465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1559" on line 106583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_156" on line 106729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1560" on line 107085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1561" on line 107097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1562" on line 107151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1563" on line 107213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1564" on line 107307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1565" on line 107425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1566" on line 107477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1567" on line 107495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1568" on line 107563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1569" on line 107655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_157" on line 107741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1570" on line 108109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1571" on line 108311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1572" on line 108379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1573" on line 108635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1574" on line 108683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1575" on line 108761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1576" on line 108877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1577" on line 109127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1578" on line 109245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1579" on line 109297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_158" on line 109553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1580" on line 110093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1581" on line 110153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1582" on line 110247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1583" on line 110287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1584" on line 110523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1585" on line 110579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1586" on line 110675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1587" on line 110743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1588" on line 110803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1589" on line 110807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_159" on line 111019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1590" on line 111403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1591" on line 111517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1592" on line 111643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1593" on line 111739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1594" on line 111805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1595" on line 111953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1596" on line 112019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1597" on line 112075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1598" on line 112231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1599" on line 112275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_16" on line 112327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_160" on line 113617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1600" on line 113865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1601" on line 113941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1602" on line 114051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1603" on line 114155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1604" on line 114283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1605" on line 114403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1606" on line 114473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1607" on line 114527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1608" on line 114639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1609" on line 114727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_161" on line 114795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1610" on line 115329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1611" on line 115455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1612" on line 115485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1613" on line 115589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1614" on line 115743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1615" on line 115831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1616" on line 115885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1617" on line 115975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1618" on line 116065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1619" on line 116215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_162" on line 116375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1620" on line 116731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1621" on line 116837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1622" on line 116917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1623" on line 117001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1624" on line 117069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1625" on line 117105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1626" on line 117227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1627" on line 117421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1628" on line 117477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1629" on line 117595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_163" on line 117647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1630" on line 118089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1631" on line 118169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1632" on line 118301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1633" on line 118361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1634" on line 118477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1635" on line 118511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1636" on line 118619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1637" on line 118827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1638" on line 118929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1639" on line 119005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_164" on line 119135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1640" on line 119425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1641" on line 119503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1642" on line 119601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1643" on line 119719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1644" on line 119799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1645" on line 120047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1646" on line 120117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1647" on line 120159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1648" on line 120247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1649" on line 120371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_165" on line 120511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1650" on line 120783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1651" on line 120855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1652" on line 121053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1653" on line 121101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1654" on line 121153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1655" on line 121257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1656" on line 121335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1657" on line 121371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1658" on line 121447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1659" on line 121489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_166" on line 121607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1660" on line 122225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1661" on line 122241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1662" on line 122397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1663" on line 122513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1664" on line 122547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1665" on line 122685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1666" on line 122739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1667" on line 122835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1668" on line 122945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1669" on line 122965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_167" on line 123117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1670" on line 123525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1671" on line 123615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1672" on line 123743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1673" on line 123917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1674" on line 124083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1675" on line 124227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1676" on line 124275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1677" on line 124381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1678" on line 124575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1679" on line 124701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_168" on line 124749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1680" on line 125275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1681" on line 125377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1682" on line 125521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1683" on line 125603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1684" on line 125683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1685" on line 125867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1686" on line 125947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1687" on line 126099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1688" on line 126197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1689" on line 126297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_169" on line 126357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1690" on line 126851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1691" on line 126975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1692" on line 127005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1693" on line 127113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1694" on line 127139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1695" on line 127169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1696" on line 127317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1697" on line 127421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1698" on line 127535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1699" on line 127627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_17" on line 127743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_170" on line 129115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1700" on line 129539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1701" on line 129649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1702" on line 129753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1703" on line 129847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1704" on line 130003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1705" on line 130077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1706" on line 130173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1707" on line 130245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1708" on line 130329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1709" on line 130345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_171" on line 130399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1710" on line 131021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1711" on line 131077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1712" on line 131183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1713" on line 131229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1714" on line 131495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1715" on line 131615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1716" on line 131649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1717" on line 131741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1718" on line 131793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1719" on line 131895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_172" on line 131995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1720" on line 132549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1721" on line 132659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1722" on line 132705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1723" on line 132763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1724" on line 132819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1725" on line 132951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1726" on line 133005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1727" on line 133065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1728" on line 133169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1729" on line 133329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_173" on line 133371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1730" on line 133779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1731" on line 133837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1732" on line 133943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1733" on line 134055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1734" on line 134101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1735" on line 134281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1736" on line 134551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1737" on line 134631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1738" on line 134827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1739" on line 134931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_174" on line 135007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1740" on line 135367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1741" on line 135419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1742" on line 135523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1743" on line 135553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1744" on line 135563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1745" on line 135587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1746" on line 135787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1747" on line 135843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1748" on line 135907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1749" on line 136013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_175" on line 136109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1750" on line 136395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1751" on line 136497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1752" on line 136571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1753" on line 136621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1754" on line 136661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1755" on line 136701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1756" on line 136827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1757" on line 136889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1758" on line 136989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1759" on line 137011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_176" on line 137125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1760" on line 137309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1761" on line 137459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1762" on line 137607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1763" on line 137667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1764" on line 137807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1765" on line 137905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1766" on line 138017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1767" on line 138121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1768" on line 138161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1769" on line 138177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_177" on line 138239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1770" on line 138705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1771" on line 138829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1772" on line 139001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1773" on line 139075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1774" on line 139137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1775" on line 139181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1776" on line 139327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1777" on line 139399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1778" on line 139445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1779" on line 139497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_178" on line 139595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1780" on line 139891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1781" on line 139987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1782" on line 140135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1783" on line 140293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1784" on line 140457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1785" on line 140545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1786" on line 140717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1787" on line 140793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1788" on line 140881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1789" on line 140971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_179" on line 141101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1790" on line 141383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1791" on line 141401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1792" on line 141445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1793" on line 141521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1794" on line 141549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1795" on line 141629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1796" on line 141749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1797" on line 141829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1798" on line 142013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1799" on line 142089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_18" on line 142247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_180" on line 143209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1800" on line 143419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1801" on line 143569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1802" on line 143651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1803" on line 143723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1804" on line 143773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1805" on line 143825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1806" on line 143905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1807" on line 143947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1808" on line 144035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1809" on line 144095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_181" on line 144117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1810" on line 144533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1811" on line 144577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1812" on line 144763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1813" on line 144897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1814" on line 144939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1815" on line 144993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1816" on line 145021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1817" on line 145063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1818" on line 145207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1819" on line 145253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_182" on line 145333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1820" on line 145815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1821" on line 145897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1822" on line 145949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1823" on line 146013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1824" on line 146095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1825" on line 146151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1826" on line 146263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1827" on line 146405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1828" on line 146519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1829" on line 146681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_183" on line 146767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1830" on line 147143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1831" on line 147213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1832" on line 147349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1833" on line 147431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1834" on line 147469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1835" on line 147539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1836" on line 147675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1837" on line 147785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1838" on line 147821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1839" on line 147911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_184" on line 147957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1840" on line 148101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1841" on line 148175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1842" on line 148221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1843" on line 148435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1844" on line 148489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1845" on line 148581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1846" on line 148647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1847" on line 148711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1848" on line 148791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1849" on line 148843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_185" on line 148945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1850" on line 149353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1851" on line 149471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1852" on line 149555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1853" on line 149653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1854" on line 149761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1855" on line 149825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1856" on line 149915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1857" on line 149977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1858" on line 150087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1859" on line 150201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_186" on line 150257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1860" on line 150821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1861" on line 150873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1862" on line 150903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1863" on line 150953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1864" on line 150995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1865" on line 151117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1866" on line 151149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1867" on line 151201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1868" on line 151277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1869" on line 151379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_187" on line 151497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1870" on line 151823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1871" on line 151885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1872" on line 151911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1873" on line 151999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1874" on line 152089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1875" on line 152141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1876" on line 152295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1877" on line 152361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1878" on line 152441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1879" on line 152449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_188" on line 152555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1880" on line 152937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1881" on line 153035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1882" on line 153101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1883" on line 153165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1884" on line 153283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1885" on line 153357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1886" on line 153451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1887" on line 153519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1888" on line 153675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1889" on line 153881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_189" on line 153947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1890" on line 154551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1891" on line 154627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1892" on line 154673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1893" on line 154747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1894" on line 154803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1895" on line 154855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1896" on line 155015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1897" on line 155085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1898" on line 155193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1899" on line 155249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_19" on line 155389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_190" on line 156465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1900" on line 156763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1901" on line 156775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1902" on line 156979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1903" on line 157007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1904" on line 157121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1905" on line 157163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1906" on line 157337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1907" on line 157423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1908" on line 157509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1909" on line 157659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_191" on line 157765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1910" on line 158135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1911" on line 158209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1912" on line 158299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1913" on line 158377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1914" on line 158579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1915" on line 158627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1916" on line 158709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1917" on line 158757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1918" on line 158809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1919" on line 158855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_192" on line 158931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1920" on line 159417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1921" on line 159629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1922" on line 159665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1923" on line 159773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1924" on line 159877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1925" on line 159937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1926" on line 160037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1927" on line 160143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1928" on line 160351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1929" on line 160429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_193" on line 160549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1930" on line 160869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1931" on line 160943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1932" on line 161037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1933" on line 161191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1934" on line 161303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1935" on line 161351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1936" on line 161389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1937" on line 161529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1938" on line 161629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1939" on line 161739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_194" on line 161869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1940" on line 162289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1941" on line 162373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1942" on line 162391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1943" on line 162487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1944" on line 162533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1945" on line 162601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1946" on line 162701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1947" on line 162771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1948" on line 162971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1949" on line 163071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_195" on line 163115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1950" on line 163599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1951" on line 163679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1952" on line 163735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1953" on line 163771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1954" on line 163879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1955" on line 163941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1956" on line 164009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1957" on line 164069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1958" on line 164159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1959" on line 164229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_196" on line 164323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1960" on line 164689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1961" on line 164813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1962" on line 164919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1963" on line 165101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1964" on line 165287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1965" on line 165397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1966" on line 165409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1967" on line 165459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1968" on line 165483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1969" on line 165565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_197" on line 165737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1970" on line 166133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1971" on line 166187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1972" on line 166235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1973" on line 166273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1974" on line 166367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1975" on line 166391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1976" on line 166515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1977" on line 166609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1978" on line 166681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1979" on line 166785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_198" on line 166891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1980" on line 167171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1981" on line 167323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1982" on line 167347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1983" on line 167431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1984" on line 167627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1985" on line 167779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1986" on line 167853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1987" on line 167947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1988" on line 167983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1989" on line 168073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_199" on line 168179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1990" on line 168767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1991" on line 168889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1992" on line 169001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1993" on line 169073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1994" on line 169185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1995" on line 169209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1996" on line 169239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1997" on line 169299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1998" on line 169381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_1999" on line 169501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2" on line 169629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_20" on line 171611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_200" on line 173077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2000" on line 173579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2001" on line 173607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2002" on line 173665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2003" on line 173827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2004" on line 173925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2005" on line 174017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2006" on line 174131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2007" on line 174173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2008" on line 174261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2009" on line 174305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_201" on line 174411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2010" on line 174797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2011" on line 174911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2012" on line 174955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2013" on line 175085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2014" on line 175191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2015" on line 175327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2016" on line 175427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2017" on line 175497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2018" on line 175611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2019" on line 175721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_202" on line 175951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2020" on line 176261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2021" on line 176353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2022" on line 176525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2023" on line 176569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2024" on line 176641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2025" on line 176719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2026" on line 176757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2027" on line 176893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2028" on line 177019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2029" on line 177115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_203" on line 177149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2030" on line 177347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2031" on line 177505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2032" on line 177569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2033" on line 177703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2034" on line 177743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2035" on line 177825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2036" on line 178001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2037" on line 178075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2038" on line 178215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2039" on line 178335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_204" on line 178425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2040" on line 178863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2041" on line 178913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2042" on line 178967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2043" on line 179037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2044" on line 179107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2045" on line 179225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2046" on line 179329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2047" on line 179421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2048" on line 179515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2049" on line 179575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_205" on line 179641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2050" on line 180137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2051" on line 180227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2052" on line 180323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2053" on line 180399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2054" on line 180437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2055" on line 180487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2056" on line 180551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2057" on line 180577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2058" on line 180635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2059" on line 180713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_206" on line 180771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2060" on line 181185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2061" on line 181201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2062" on line 181295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2063" on line 181353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2064" on line 181475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2065" on line 181559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2066" on line 181591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2067" on line 181605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2068" on line 181641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2069" on line 181705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_207" on line 181761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2070" on line 182073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2071" on line 182227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2072" on line 182263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2073" on line 182335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2074" on line 182393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2075" on line 182467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2076" on line 182529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2077" on line 182575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2078" on line 182681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2079" on line 182731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_208" on line 182909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2080" on line 183249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2081" on line 183329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2082" on line 183427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2083" on line 183471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2084" on line 183551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2085" on line 183641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2086" on line 183701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2087" on line 183765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2088" on line 183859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2089" on line 183953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_209" on line 184009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2090" on line 184415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2091" on line 184495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2092" on line 184557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2093" on line 184629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2094" on line 184699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2095" on line 184729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2096" on line 184849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2097" on line 184937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2098" on line 184997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2099" on line 185089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_21" on line 185197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_210" on line 186373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2100" on line 186871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2101" on line 186963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2102" on line 187121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2103" on line 187193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2104" on line 187277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2105" on line 187337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2106" on line 187389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2107" on line 187457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2108" on line 187525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2109" on line 187599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_211" on line 187631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2110" on line 188119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2111" on line 188161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2112" on line 188211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2113" on line 188275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2114" on line 188409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2115" on line 188487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2116" on line 188605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2117" on line 188697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2118" on line 188771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2119" on line 188817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_212" on line 188909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2120" on line 189085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2121" on line 189131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2122" on line 189189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2123" on line 189237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2124" on line 189355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2125" on line 189461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2126" on line 189503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2127" on line 189609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2128" on line 189665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2129" on line 189717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_213" on line 189793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2130" on line 190139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2131" on line 190241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2132" on line 190341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2133" on line 190519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2134" on line 190565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2135" on line 190745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2136" on line 190831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2137" on line 190981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2138" on line 191019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2139" on line 191059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_214" on line 191155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2140" on line 191667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2141" on line 191851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2142" on line 192015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2143" on line 192147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2144" on line 192171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2145" on line 192221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2146" on line 192263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2147" on line 192359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2148" on line 192445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2149" on line 192495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_215" on line 192537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2150" on line 192995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2151" on line 193141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2152" on line 193185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2153" on line 193213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2154" on line 193363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2155" on line 193393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2156" on line 193477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2157" on line 193563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2158" on line 193627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2159" on line 193679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_216" on line 193821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2160" on line 194101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2161" on line 194151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2162" on line 194169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2163" on line 194273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2164" on line 194343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2165" on line 194383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2166" on line 194499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2167" on line 194507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2168" on line 194553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2169" on line 194595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_217" on line 194661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2170" on line 194925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2171" on line 195141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2172" on line 195205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2173" on line 195273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2174" on line 195377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2175" on line 195441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2176" on line 195455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2177" on line 195591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2178" on line 195673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2179" on line 195773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_218" on line 195833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2180" on line 196301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2181" on line 196389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2182" on line 196483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2183" on line 196525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2184" on line 196571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2185" on line 196593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2186" on line 196779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2187" on line 196809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2188" on line 196909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2189" on line 196997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_219" on line 197147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2190" on line 197959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2191" on line 198053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2192" on line 198099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2193" on line 198241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2194" on line 198311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2195" on line 198369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2196" on line 198431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2197" on line 198537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2198" on line 198607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2199" on line 198721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_22" on line 198829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_220" on line 199839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2200" on line 200375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2201" on line 200531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2202" on line 200561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2203" on line 200631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2204" on line 200673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2205" on line 200829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2206" on line 200907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2207" on line 201021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2208" on line 201077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2209" on line 201121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_221" on line 201187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2210" on line 201577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2211" on line 201719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2212" on line 201767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2213" on line 201811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2214" on line 201871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2215" on line 201953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2216" on line 202007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2217" on line 202037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2218" on line 202267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2219" on line 202341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_222" on line 202453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2220" on line 202787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2221" on line 202823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2222" on line 202905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2223" on line 203041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2224" on line 203095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2225" on line 203189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2226" on line 203251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2227" on line 203399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2228" on line 203475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2229" on line 203523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_223" on line 203579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2230" on line 203981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2231" on line 204027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2232" on line 204133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2233" on line 204225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2234" on line 204305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2235" on line 204313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2236" on line 204363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2237" on line 204377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2238" on line 204411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2239" on line 204497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_224" on line 204591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2240" on line 204963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2241" on line 204997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2242" on line 205047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2243" on line 205115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2244" on line 205237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2245" on line 205385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2246" on line 205519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2247" on line 205669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2248" on line 205703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2249" on line 205755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_225" on line 205819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2250" on line 206361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2251" on line 206471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2252" on line 206549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2253" on line 206649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2254" on line 206771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2255" on line 206859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2256" on line 206931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2257" on line 206981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2258" on line 207069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2259" on line 207117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_226" on line 207225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2260" on line 207683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2261" on line 207721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2262" on line 207767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2263" on line 207831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2264" on line 207905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2265" on line 207923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2266" on line 207965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2267" on line 208005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2268" on line 208065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2269" on line 208201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_227" on line 208233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2270" on line 208687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2271" on line 208749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2272" on line 208799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2273" on line 208821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2274" on line 208939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2275" on line 208959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2276" on line 209027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2277" on line 209095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2278" on line 209179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2279" on line 209223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_228" on line 209291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2280" on line 209555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2281" on line 209603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2282" on line 209621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2283" on line 209663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2284" on line 209709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2285" on line 209749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2286" on line 209779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2287" on line 209821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2288" on line 209875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2289" on line 209915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_229" on line 209943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2290" on line 210287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2291" on line 210321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2292" on line 210371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2293" on line 210413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2294" on line 210509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2295" on line 210599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2296" on line 210685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2297" on line 210709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2298" on line 210807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2299" on line 210917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_23" on line 211033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_230" on line 212105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2300" on line 212411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2301" on line 212527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2302" on line 212587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2303" on line 212629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2304" on line 212711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2305" on line 212741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2306" on line 212865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2307" on line 212875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2308" on line 212931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2309" on line 213015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_231" on line 213057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2310" on line 213631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2311" on line 213653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2312" on line 213755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2313" on line 213791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2314" on line 213861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2315" on line 213871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2316" on line 213955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2317" on line 214055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2318" on line 214151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2319" on line 214227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_232" on line 214271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2320" on line 214647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2321" on line 214695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2322" on line 214715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2323" on line 214809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2324" on line 214895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2325" on line 214917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2326" on line 214951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2327" on line 215009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2328" on line 215097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2329" on line 215215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_233" on line 215337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2330" on line 215695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2331" on line 215739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2332" on line 215877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2333" on line 215967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2334" on line 216029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2335" on line 216063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2336" on line 216103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2337" on line 216159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2338" on line 216183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2339" on line 216199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_234" on line 216269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2340" on line 216575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2341" on line 216661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2342" on line 216781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2343" on line 216807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2344" on line 216861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2345" on line 216917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2346" on line 216961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2347" on line 217015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2348" on line 217097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2349" on line 217183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_235" on line 217201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2350" on line 217341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2351" on line 217413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2352" on line 217481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2353" on line 217569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2354" on line 217607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2355" on line 217641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2356" on line 217741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2357" on line 217789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2358" on line 217873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2359" on line 217921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_236" on line 218033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2360" on line 218379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2361" on line 218399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2362" on line 218407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2363" on line 218507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2364" on line 218611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2365" on line 218699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2366" on line 218729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2367" on line 218827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2368" on line 218843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2369" on line 218943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_237" on line 218959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2370" on line 219307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2371" on line 219359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2372" on line 219385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2373" on line 219481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2374" on line 219615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2375" on line 219709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2376" on line 219843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2377" on line 219883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2378" on line 219949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2379" on line 220033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_238" on line 220067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2380" on line 220511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2381" on line 220625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2382" on line 220735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2383" on line 220759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2384" on line 220813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2385" on line 220893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2386" on line 220989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2387" on line 221119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2388" on line 221173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2389" on line 221279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_239" on line 221413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2390" on line 221525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2391" on line 221563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2392" on line 221611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2393" on line 221651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2394" on line 221723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2395" on line 221755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2396" on line 221797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2397" on line 221891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2398" on line 221901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2399" on line 221925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_24" on line 221969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_240" on line 223251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2400" on line 223789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2401" on line 223909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2402" on line 224021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2403" on line 224127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2404" on line 224247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2405" on line 224347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2406" on line 224393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2407" on line 224453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2408" on line 224467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2409" on line 224519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_241" on line 224547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2410" on line 224979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2411" on line 225019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2412" on line 225107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2413" on line 225193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2414" on line 225245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2415" on line 225289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2416" on line 225337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2417" on line 225387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2418" on line 225449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2419" on line 225561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_242" on line 225677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2420" on line 225835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2421" on line 225921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2422" on line 226003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2423" on line 226071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2424" on line 226113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2425" on line 226211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2426" on line 226251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2427" on line 226293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2428" on line 226347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2429" on line 226393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_243" on line 226495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2430" on line 226937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2431" on line 227019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2432" on line 227089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2433" on line 227163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2434" on line 227237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2435" on line 227291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2436" on line 227371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2437" on line 227423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2438" on line 227435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2439" on line 227507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_244" on line 227561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2440" on line 227815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2441" on line 227901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2442" on line 227993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2443" on line 228085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2444" on line 228119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2445" on line 228207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2446" on line 228303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2447" on line 228315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2448" on line 228357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2449" on line 228417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_245" on line 228523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2450" on line 228819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2451" on line 228873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2452" on line 228927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2453" on line 228995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2454" on line 229049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2455" on line 229225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2456" on line 229287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2457" on line 229311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2458" on line 229427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2459" on line 229551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_246" on line 229641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2460" on line 229877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2461" on line 229951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2462" on line 230049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2463" on line 230143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2464" on line 230203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2465" on line 230355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2466" on line 230431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2467" on line 230503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2468" on line 230533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2469" on line 230597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_247" on line 230685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2470" on line 230893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2471" on line 230939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2472" on line 231015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2473" on line 231099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2474" on line 231143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2475" on line 231159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2476" on line 231201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2477" on line 231285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2478" on line 231291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2479" on line 231323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_248" on line 231495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2480" on line 232095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2481" on line 232183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2482" on line 232213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2483" on line 232349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2484" on line 232359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2485" on line 232415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2486" on line 232565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2487" on line 232609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2488" on line 232707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2489" on line 232749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_249" on line 232845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2490" on line 233061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2491" on line 233203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2492" on line 233309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2493" on line 233383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2494" on line 233509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2495" on line 233539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2496" on line 233657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2497" on line 233681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2498" on line 233729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2499" on line 233765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_25" on line 233813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_250" on line 234859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2500" on line 235103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2501" on line 235183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2502" on line 235233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2503" on line 235269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2504" on line 235305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2505" on line 235347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2506" on line 235377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2507" on line 235415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2508" on line 235499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2509" on line 235601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_251" on line 235663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2510" on line 236005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2511" on line 236131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2512" on line 236165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2513" on line 236169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2514" on line 236217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2515" on line 236301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2516" on line 236319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2517" on line 236483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2518" on line 236523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2519" on line 236595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_252" on line 236647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2520" on line 237061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2521" on line 237153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2522" on line 237231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2523" on line 237263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2524" on line 237353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2525" on line 237395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2526" on line 237467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2527" on line 237513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2528" on line 237585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2529" on line 237611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_253" on line 237721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2530" on line 238063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2531" on line 238125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2532" on line 238159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2533" on line 238251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2534" on line 238283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2535" on line 238319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2536" on line 238397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2537" on line 238491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2538" on line 238567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2539" on line 238589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_254" on line 238661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2540" on line 238959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2541" on line 238983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2542" on line 239039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2543" on line 239191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2544" on line 239285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2545" on line 239359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2546" on line 239411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2547" on line 239445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2548" on line 239537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2549" on line 239637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_255" on line 239711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2550" on line 240037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2551" on line 240079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2552" on line 240181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2553" on line 240235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2554" on line 240285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2555" on line 240359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2556" on line 240443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2557" on line 240483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2558" on line 240513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2559" on line 240547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_256" on line 240679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2560" on line 241219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2561" on line 241267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2562" on line 241351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2563" on line 241399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2564" on line 241449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2565" on line 241493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2566" on line 241655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2567" on line 241693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2568" on line 241837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2569" on line 241931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_257" on line 241975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2570" on line 242459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2571" on line 242551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2572" on line 242621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2573" on line 242713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2574" on line 242755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2575" on line 242813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2576" on line 242833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2577" on line 242931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2578" on line 242983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2579" on line 243035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_258" on line 243067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2580" on line 243243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2581" on line 243309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2582" on line 243357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2583" on line 243383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2584" on line 243399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2585" on line 243481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2586" on line 243563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2587" on line 243615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2588" on line 243701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2589" on line 243755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_259" on line 243771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2590" on line 243951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2591" on line 243965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2592" on line 244015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2593" on line 244035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2594" on line 244161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2595" on line 244273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2596" on line 244359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2597" on line 244401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2598" on line 244447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2599" on line 244567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_26" on line 244587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_260" on line 245701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2600" on line 246103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2601" on line 246147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2602" on line 246217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2603" on line 246309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2604" on line 246371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2605" on line 246391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2606" on line 246453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2607" on line 246517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2608" on line 246669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2609" on line 246699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_261" on line 246731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2610" on line 247025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2611" on line 247041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2612" on line 247095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2613" on line 247119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2614" on line 247173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2615" on line 247223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2616" on line 247309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2617" on line 247389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2618" on line 247429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2619" on line 247459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_262" on line 247593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2620" on line 247963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2621" on line 248071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2622" on line 248175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2623" on line 248275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2624" on line 248325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2625" on line 248337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2626" on line 248387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2627" on line 248465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2628" on line 248555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2629" on line 248665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_263" on line 248709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2630" on line 249165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2631" on line 249235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2632" on line 249315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2633" on line 249341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2634" on line 249375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2635" on line 249465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2636" on line 249473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2637" on line 249513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2638" on line 249591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2639" on line 249659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_264" on line 249777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2641" on line 250161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2642" on line 250199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2643" on line 250281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2644" on line 250311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2645" on line 250391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2646" on line 250461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2647" on line 250531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2648" on line 250589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2649" on line 250597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_265" on line 250617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2650" on line 250903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2651" on line 250929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2652" on line 250939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2653" on line 250999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2654" on line 251101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2655" on line 251169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2656" on line 251253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2657" on line 251319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2658" on line 251379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2659" on line 251457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_266" on line 251543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2660" on line 251925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2661" on line 251971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2662" on line 251981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2663" on line 252017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2664" on line 252067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2665" on line 252153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2666" on line 252175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2667" on line 252245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2668" on line 252321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2669" on line 252365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_267" on line 252449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2670" on line 252611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2671" on line 252725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2672" on line 252739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2673" on line 252743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2674" on line 252819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2675" on line 252867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2676" on line 252959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2677" on line 253003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2678" on line 253051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2679" on line 253145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_268" on line 253173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2680" on line 253563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2681" on line 253593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2682" on line 253629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2683" on line 253695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2684" on line 253727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2685" on line 253765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2686" on line 253871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2687" on line 253915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2688" on line 254025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2689" on line 254085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_269" on line 254129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2690" on line 254303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2691" on line 254383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2692" on line 254451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2693" on line 254507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2694" on line 254541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2695" on line 254637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2696" on line 254723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2697" on line 254785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2698" on line 254833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2699" on line 254851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_27" on line 254897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_270" on line 255655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2700" on line 256213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2701" on line 256269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2702" on line 256311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2703" on line 256379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2704" on line 256421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2705" on line 256499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2706" on line 256591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2707" on line 256609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2708" on line 256671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2709" on line 256735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_271" on line 256837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2710" on line 257191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2711" on line 257333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2712" on line 257393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2713" on line 257441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2714" on line 257555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2715" on line 257593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2716" on line 257689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2717" on line 257747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2718" on line 257883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2719" on line 257941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_272" on line 257959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2720" on line 258277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2721" on line 258353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2722" on line 258399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2723" on line 258481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2724" on line 258519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2725" on line 258581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2726" on line 258691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2727" on line 258787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2728" on line 258853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2729" on line 258927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_273" on line 258961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2730" on line 259261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2731" on line 259305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2732" on line 259391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2733" on line 259441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2734" on line 259473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2735" on line 259525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2736" on line 259597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2737" on line 259693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2738" on line 259799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2739" on line 259863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_274" on line 259891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2740" on line 260255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2741" on line 260357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2742" on line 260469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2743" on line 260559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2744" on line 260633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2745" on line 260759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2746" on line 260865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2747" on line 260895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2748" on line 260981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2749" on line 261061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_275" on line 261257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2750" on line 261637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2751" on line 261673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2752" on line 261707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2753" on line 261847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2754" on line 261883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2755" on line 261945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2756" on line 261997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2757" on line 262027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2758" on line 262179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2759" on line 262191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_276" on line 262241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2760" on line 262583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2761" on line 262647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2762" on line 262739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2763" on line 262811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2764" on line 262839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2766" on line 262989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2767" on line 263069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2768" on line 263149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2769" on line 263193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_277" on line 263273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2770" on line 263515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2771" on line 263591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2772" on line 263649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2774" on line 263659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2775" on line 263699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2776" on line 263749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2777" on line 263801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2778" on line 263911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2779" on line 263959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_278" on line 264013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2780" on line 264191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2781" on line 264237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2782" on line 264285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2783" on line 264325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2784" on line 264395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2785" on line 264421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2786" on line 264477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2787" on line 264499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2788" on line 264573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2789" on line 264611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_279" on line 264657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2790" on line 264983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2791" on line 264997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2792" on line 265027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2793" on line 265117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2794" on line 265173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2795" on line 265195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2796" on line 265227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2797" on line 265353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2798" on line 265431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2799" on line 265449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_28" on line 265547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_280" on line 266355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2800" on line 266641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2801" on line 266685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2802" on line 266735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2803" on line 266823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2804" on line 266827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2805" on line 266841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2806" on line 266885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2807" on line 266907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2808" on line 266947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2809" on line 267019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_281" on line 267091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2810" on line 267395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2811" on line 267513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2812" on line 267587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2813" on line 267665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2814" on line 267721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2815" on line 267733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2816" on line 267763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2817" on line 267901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2818" on line 268007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2819" on line 268051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_282" on line 268125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2820" on line 268445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2821" on line 268515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2822" on line 268551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2823" on line 268613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2824" on line 268707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2825" on line 268805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2826" on line 268847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2827" on line 268869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2828" on line 268907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2829" on line 268997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_283" on line 269049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2830" on line 269229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2831" on line 269253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2832" on line 269297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2833" on line 269321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2834" on line 269423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2835" on line 269543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2836" on line 269603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2837" on line 269675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2838" on line 269725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2839" on line 269731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_284" on line 269819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2840" on line 270133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2841" on line 270165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2842" on line 270177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2843" on line 270189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2844" on line 270283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2845" on line 270311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2846" on line 270399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2847" on line 270461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2848" on line 270549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2849" on line 270565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_285" on line 270597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2850" on line 270821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2851" on line 270859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2852" on line 270887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2853" on line 270955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2854" on line 270989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2855" on line 271005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2856" on line 271051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2857" on line 271097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2858" on line 271169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2859" on line 271243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_286" on line 271323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2860" on line 271461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2861" on line 271481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2862" on line 271561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2863" on line 271641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2864" on line 271677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2865" on line 271727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2866" on line 271811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2867" on line 271885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2868" on line 271897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2869" on line 271963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_287" on line 271991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2870" on line 272233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2871" on line 272283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2872" on line 272315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2873" on line 272395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2874" on line 272445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2875" on line 272483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2876" on line 272581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2877" on line 272613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2878" on line 272693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2879" on line 272723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_288" on line 272783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2880" on line 273109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2881" on line 273141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2882" on line 273155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2883" on line 273207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2884" on line 273271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2885" on line 273345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2886" on line 273427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2887" on line 273507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2888" on line 273541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_289" on line 273605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2890" on line 273803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2891" on line 273823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2892" on line 273841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2893" on line 273901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2894" on line 273971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2895" on line 274027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2896" on line 274083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2897" on line 274095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2898" on line 274185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2899" on line 274243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_29" on line 274337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_290" on line 275403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2900" on line 275747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2901" on line 275763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2902" on line 275827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2904" on line 275865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2905" on line 275935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2906" on line 276083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2908" on line 276161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2909" on line 276255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_291" on line 276299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2910" on line 276569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2911" on line 276637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2912" on line 276739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2913" on line 276773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2914" on line 276877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2915" on line 276999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2916" on line 277173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2917" on line 277191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2918" on line 277243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2919" on line 277327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_292" on line 277405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2920" on line 277791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2921" on line 277817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2922" on line 277917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2923" on line 278003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2924" on line 278077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2925" on line 278137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2926" on line 278159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2927" on line 278177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2928" on line 278317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2929" on line 278401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_293" on line 278451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2930" on line 278755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2931" on line 278815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2932" on line 278941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2933" on line 279017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2934" on line 279055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2935" on line 279115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2936" on line 279127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2937" on line 279165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2938" on line 279185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2939" on line 279209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_294" on line 279253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2940" on line 279571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2941" on line 279577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2943" on line 279657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2944" on line 279677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2945" on line 279779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2946" on line 279821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2947" on line 279837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2948" on line 279863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2949" on line 279889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_295" on line 279923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2950" on line 280415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2951" on line 280449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2952" on line 280529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2953" on line 280573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2954" on line 280617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2955" on line 280685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2956" on line 280757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2957" on line 280799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2958" on line 280815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2959" on line 280859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_296" on line 280923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2960" on line 281051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2961" on line 281153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2962" on line 281187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2963" on line 281269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2964" on line 281341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2965" on line 281441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2966" on line 281565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2967" on line 281591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2968" on line 281621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2969" on line 281689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_297" on line 281747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2970" on line 282115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2971" on line 282177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2972" on line 282261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2973" on line 282313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2974" on line 282351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2975" on line 282415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2976" on line 282429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2977" on line 282545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2978" on line 282551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2979" on line 282595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_298" on line 282679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2980" on line 282837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2981" on line 282921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2982" on line 282999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2983" on line 283061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2984" on line 283135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2985" on line 283223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2986" on line 283241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2987" on line 283283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2988" on line 283399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2989" on line 283445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_299" on line 283499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2990" on line 283771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2991" on line 283861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2992" on line 283915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2993" on line 283957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2994" on line 284009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2995" on line 284087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2996" on line 284135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2997" on line 284249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2998" on line 284295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_2999" on line 284333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3" on line 284397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_30" on line 285653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_300" on line 286589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3000" on line 286931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3001" on line 286965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3002" on line 287025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3003" on line 287073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3004" on line 287113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3006" on line 287125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3007" on line 287169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3008" on line 287223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3009" on line 287235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_301" on line 287293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3010" on line 287517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3011" on line 287541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3012" on line 287589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3013" on line 287633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3014" on line 287723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3015" on line 287755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3016" on line 287835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3017" on line 287967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3018" on line 288011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3019" on line 288065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_302" on line 288127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3020" on line 288517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3021" on line 288545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3022" on line 288627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3023" on line 288637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3024" on line 288695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3025" on line 288723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3026" on line 288773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3027" on line 288813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3028" on line 288857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3029" on line 288869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_303" on line 288987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3030" on line 289249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3031" on line 289265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3032" on line 289371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3033" on line 289487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3034" on line 289575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3035" on line 289703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3036" on line 289769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3037" on line 289853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3038" on line 289869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3039" on line 289923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_304" on line 289965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3040" on line 290477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3041" on line 290541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3042" on line 290563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3043" on line 290579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3044" on line 290651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3045" on line 290675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3046" on line 290749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3047" on line 290811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3048" on line 290831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3049" on line 290889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_305" on line 290913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3050" on line 291073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3051" on line 291141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3052" on line 291157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3053" on line 291219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3054" on line 291293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3055" on line 291393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3056" on line 291439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3057" on line 291443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3058" on line 291461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3059" on line 291491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_306" on line 291509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3060" on line 291771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3061" on line 291799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3062" on line 291885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3063" on line 291925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3064" on line 291939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3065" on line 291991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3066" on line 292001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3067" on line 292113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3068" on line 292157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3069" on line 292247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_307" on line 292271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3070" on line 292715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3071" on line 292781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3072" on line 292801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3073" on line 292863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3074" on line 292909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3075" on line 292923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3076" on line 292953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3077" on line 292965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3078" on line 292989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3079" on line 292993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_308" on line 293079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3080" on line 293327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3081" on line 293425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3082" on line 293449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3083" on line 293525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3084" on line 293563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3085" on line 293661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3086" on line 293703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3087" on line 293727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3088" on line 293783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3089" on line 293821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_309" on line 293875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3090" on line 294345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3091" on line 294365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3092" on line 294379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3093" on line 294491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3094" on line 294543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3095" on line 294605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3096" on line 294659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3097" on line 294779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3098" on line 294801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3099" on line 294833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_31" on line 294855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_310" on line 295801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3100" on line 296205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3101" on line 296213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3102" on line 296261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3103" on line 296339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3104" on line 296379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3105" on line 296429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3106" on line 296549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3107" on line 296623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3108" on line 296755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3109" on line 296777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_311" on line 296805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3110" on line 297143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3111" on line 297219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3112" on line 297297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3113" on line 297389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3114" on line 297423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3115" on line 297455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3116" on line 297481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3117" on line 297531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3118" on line 297557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3119" on line 297577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_312" on line 297613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3120" on line 297723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3121" on line 297787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3122" on line 297875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3123" on line 297935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3124" on line 297947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3125" on line 297985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3126" on line 298025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3127" on line 298113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3128" on line 298207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3129" on line 298221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_313" on line 298251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3130" on line 298705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3131" on line 298735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3132" on line 298745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3133" on line 298865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3134" on line 298895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3135" on line 298907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3136" on line 298979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3137" on line 298991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3138" on line 299009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3139" on line 299043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_314" on line 299087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3140" on line 299415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3141" on line 299487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3142" on line 299529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3143" on line 299587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3144" on line 299605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3145" on line 299679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3146" on line 299743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3147" on line 299753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3148" on line 299815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3149" on line 299861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_315" on line 299881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3150" on line 299997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3151" on line 300067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3152" on line 300105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3153" on line 300175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3155" on line 300223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3156" on line 300233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3157" on line 300289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3158" on line 300303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3159" on line 300325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_316" on line 300329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3160" on line 300671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3161" on line 300697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3162" on line 300725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3164" on line 300793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3165" on line 300873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3166" on line 300949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3167" on line 300999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3168" on line 301071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3169" on line 301185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_317" on line 301229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3170" on line 301527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3171" on line 301571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3172" on line 301595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3173" on line 301631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3174" on line 301723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3175" on line 301781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3176" on line 301787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3177" on line 301815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3178" on line 301895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3179" on line 301931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_318" on line 301957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3180" on line 302185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3181" on line 302199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3182" on line 302267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3183" on line 302297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3184" on line 302333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3185" on line 302373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3186" on line 302399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3187" on line 302427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3188" on line 302487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3189" on line 302497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_319" on line 302539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3190" on line 302927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3191" on line 303007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3192" on line 303047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3195" on line 303063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3196" on line 303091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3197" on line 303105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3198" on line 303163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3199" on line 303245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_32" on line 303275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_320" on line 304407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3200" on line 304665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3201" on line 304681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3202" on line 304715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3203" on line 304815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3204" on line 304845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3205" on line 304929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3206" on line 304987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3207" on line 305017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3208" on line 305109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3209" on line 305133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_321" on line 305199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3210" on line 305249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3211" on line 305261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3212" on line 305317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3213" on line 305343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3214" on line 305389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3215" on line 305487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3216" on line 305511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3217" on line 305557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3218" on line 305585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3219" on line 305643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_322" on line 305717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3220" on line 306079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3221" on line 306137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3222" on line 306161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3223" on line 306191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3224" on line 306221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3225" on line 306303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3226" on line 306361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3227" on line 306401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3228" on line 306437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3229" on line 306495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_323" on line 306515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3230" on line 306737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3231" on line 306755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3232" on line 306869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3233" on line 306973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3234" on line 306993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3236" on line 307019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3237" on line 307075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3238" on line 307155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3239" on line 307191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_324" on line 307229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3240" on line 307575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3241" on line 307611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3242" on line 307637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3243" on line 307683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3245" on line 307799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3246" on line 307839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3247" on line 307875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3248" on line 307917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3249" on line 307985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_325" on line 308057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3250" on line 308715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3251" on line 308799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3252" on line 308819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3253" on line 308871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3254" on line 308901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3255" on line 308909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3256" on line 308965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3257" on line 308989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3258" on line 309045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3259" on line 309139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_326" on line 309159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3260" on line 309535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3261" on line 309551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3262" on line 309629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3263" on line 309703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3265" on line 309741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3266" on line 309777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3267" on line 309859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3268" on line 309893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3269" on line 309947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_327" on line 310025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3270" on line 310213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3271" on line 310229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3272" on line 310319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3273" on line 310361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3274" on line 310399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3275" on line 310449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3276" on line 310481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3277" on line 310513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3278" on line 310545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3279" on line 310587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_328" on line 310645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3281" on line 310929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3282" on line 310945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3283" on line 310967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3284" on line 311007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3285" on line 311011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3286" on line 311129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3287" on line 311155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3289" on line 311219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_329" on line 311273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3290" on line 311665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3291" on line 311743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3292" on line 311791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3293" on line 311805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3294" on line 311815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3296" on line 311869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3297" on line 311941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3298" on line 312063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3299" on line 312139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_33" on line 312197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_330" on line 313123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3300" on line 313509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3301" on line 313563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3302" on line 313611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3303" on line 313645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3304" on line 313669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3305" on line 313741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3306" on line 313821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3307" on line 313849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3308" on line 313861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3309" on line 313911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_331" on line 313967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3310" on line 314305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3311" on line 314387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3312" on line 314429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3313" on line 314441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3314" on line 314491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3315" on line 314527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3316" on line 314555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3317" on line 314607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3318" on line 314625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3319" on line 314665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_332" on line 314709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3321" on line 315023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3322" on line 315055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3323" on line 315085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3324" on line 315181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3325" on line 315191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3326" on line 315263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3327" on line 315289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3328" on line 315309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3329" on line 315377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_333" on line 315445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3330" on line 315801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3331" on line 315865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3332" on line 315923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3333" on line 315981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3334" on line 316011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3335" on line 316023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3336" on line 316097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3337" on line 316149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3338" on line 316167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3339" on line 316183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_334" on line 316209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3340" on line 316617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3341" on line 316637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3342" on line 316657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3343" on line 316741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3344" on line 316757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3345" on line 316819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3346" on line 316865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3347" on line 316883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3348" on line 316923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3349" on line 317013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_335" on line 317043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3350" on line 317339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3351" on line 317401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3352" on line 317467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3353" on line 317507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3354" on line 317587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3355" on line 317617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3356" on line 317675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3357" on line 317703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3358" on line 317721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3359" on line 317743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_336" on line 317779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3360" on line 318035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3361" on line 318059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3362" on line 318123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3363" on line 318165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3364" on line 318169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3365" on line 318201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3366" on line 318259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3367" on line 318329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3368" on line 318367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3369" on line 318437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_337" on line 318509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3370" on line 318711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3371" on line 318721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3372" on line 318783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3373" on line 318859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3374" on line 318865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3375" on line 318951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3376" on line 318965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3377" on line 319017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3378" on line 319075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3379" on line 319115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_338" on line 319153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3380" on line 319389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3381" on line 319471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3382" on line 319511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3383" on line 319605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3384" on line 319645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3385" on line 319649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3386" on line 319715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3387" on line 319743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3388" on line 319821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3389" on line 319831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_339" on line 319839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3390" on line 320129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3391" on line 320161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3392" on line 320237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3393" on line 320279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3395" on line 320283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3396" on line 320309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3397" on line 320329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3398" on line 320347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3399" on line 320391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_34" on line 320409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_340" on line 321009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3400" on line 321189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3401" on line 321257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3402" on line 321329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3403" on line 321405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3404" on line 321463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3405" on line 321515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3406" on line 321525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3407" on line 321529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3408" on line 321561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3409" on line 321573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_341" on line 321593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3410" on line 321931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3411" on line 321975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3412" on line 321993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3413" on line 322029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3414" on line 322101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3415" on line 322185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3416" on line 322225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3417" on line 322241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3418" on line 322281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3419" on line 322339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_342" on line 322347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3420" on line 322713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3422" on line 322757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3423" on line 322781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3424" on line 322883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3425" on line 322961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3426" on line 322981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3427" on line 323001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3428" on line 323029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3429" on line 323087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_343" on line 323135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3430" on line 323547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3431" on line 323565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3432" on line 323631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3433" on line 323649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3434" on line 323721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3435" on line 323749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3436" on line 323771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3437" on line 323789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3438" on line 323823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3439" on line 323871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_344" on line 323915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3440" on line 324261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3441" on line 324287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3442" on line 324375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3443" on line 324411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3444" on line 324477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3445" on line 324537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3446" on line 324569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3447" on line 324601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3448" on line 324633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3449" on line 324681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_345" on line 324751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3450" on line 325153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3451" on line 325201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3452" on line 325287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3453" on line 325347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3454" on line 325385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3456" on line 325483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3457" on line 325573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3458" on line 325639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3459" on line 325697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_346" on line 325719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3460" on line 325817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3461" on line 325887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3462" on line 325917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3463" on line 325921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3464" on line 325969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3465" on line 326015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3466" on line 326061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3467" on line 326071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3468" on line 326137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3469" on line 326193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_347" on line 326235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3470" on line 326501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3471" on line 326537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3472" on line 326647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3473" on line 326659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3474" on line 326723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3475" on line 326789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3476" on line 326819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3477" on line 326837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3478" on line 326877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3479" on line 326961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_348" on line 326997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3480" on line 327349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3481" on line 327377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3482" on line 327383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3483" on line 327417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3484" on line 327435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3485" on line 327479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3486" on line 327511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3487" on line 327515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3488" on line 327565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3489" on line 327687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_349" on line 327715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3490" on line 328065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3491" on line 328087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3492" on line 328103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3493" on line 328157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3494" on line 328165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3495" on line 328225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3496" on line 328255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3497" on line 328323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3498" on line 328377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3499" on line 328417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_35" on line 328463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_350" on line 329297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3500" on line 329607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3501" on line 329617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3502" on line 329667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3503" on line 329711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3504" on line 329735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3505" on line 329781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3506" on line 329847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3507" on line 329897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3508" on line 329913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3509" on line 329941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_351" on line 329945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3510" on line 330159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3511" on line 330211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3512" on line 330235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3513" on line 330287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3514" on line 330311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3515" on line 330333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3517" on line 330359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3518" on line 330387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3519" on line 330471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_352" on line 330553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3520" on line 330875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3521" on line 330919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3522" on line 330945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3523" on line 331033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3524" on line 331049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3525" on line 331113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3526" on line 331153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3527" on line 331179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3528" on line 331189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3529" on line 331233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_353" on line 331241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3530" on line 331557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3531" on line 331589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3532" on line 331635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3533" on line 331647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3534" on line 331653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3535" on line 331685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3536" on line 331787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3537" on line 331813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3538" on line 331827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3539" on line 331905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_354" on line 331961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3540" on line 332115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3541" on line 332121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3542" on line 332207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3543" on line 332251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3544" on line 332333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3545" on line 332347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3546" on line 332355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3547" on line 332411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3548" on line 332473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3549" on line 332517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_355" on line 332533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3550" on line 332873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3552" on line 332931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3553" on line 332991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3554" on line 333035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3555" on line 333105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3556" on line 333129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3557" on line 333135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3558" on line 333165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3559" on line 333201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_356" on line 333215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3560" on line 333551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3561" on line 333601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3562" on line 333643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3563" on line 333715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3564" on line 333749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3565" on line 333815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3566" on line 333833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3567" on line 333843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3568" on line 333949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3569" on line 334017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_357" on line 334071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3570" on line 334251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3571" on line 334297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3572" on line 334343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3573" on line 334443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3574" on line 334487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3575" on line 334509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3576" on line 334567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3577" on line 334635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3578" on line 334661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3579" on line 334677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_358" on line 334687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3580" on line 334921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3581" on line 335013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3582" on line 335025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3583" on line 335041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3584" on line 335047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3585" on line 335081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3586" on line 335129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3588" on line 335195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3589" on line 335231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_359" on line 335281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3590" on line 335473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3591" on line 335517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3592" on line 335527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3594" on line 335561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3595" on line 335591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3596" on line 335617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3597" on line 335631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3598" on line 335701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3599" on line 335747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_36" on line 335773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_360" on line 336675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3600" on line 336983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3601" on line 337011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3602" on line 337041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3603" on line 337073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3604" on line 337087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3605" on line 337145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3606" on line 337173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3607" on line 337249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3608" on line 337255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3609" on line 337353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_361" on line 337387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3610" on line 337559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3611" on line 337589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3612" on line 337687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3613" on line 337723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3614" on line 337757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3615" on line 337795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3616" on line 337841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3617" on line 337865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3618" on line 337899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3619" on line 337925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_362" on line 337949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3621" on line 338157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3622" on line 338223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3623" on line 338259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3624" on line 338269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3625" on line 338283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3626" on line 338333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3627" on line 338365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3628" on line 338375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3629" on line 338403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_363" on line 338419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3630" on line 338795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3631" on line 338801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3632" on line 338877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3633" on line 338919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3634" on line 338931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3635" on line 338999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3636" on line 339011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3637" on line 339035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3638" on line 339099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3639" on line 339145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_364" on line 339207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3640" on line 339323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3641" on line 339357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3642" on line 339365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3643" on line 339407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3644" on line 339435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3645" on line 339455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3647" on line 339507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3648" on line 339543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3649" on line 339575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_365" on line 339607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3650" on line 339843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3651" on line 339883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3652" on line 339909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3653" on line 339937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3654" on line 339979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3655" on line 340017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3656" on line 340027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3657" on line 340037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3658" on line 340101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3659" on line 340167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_366" on line 340193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3660" on line 340467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3661" on line 340487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3662" on line 340505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3663" on line 340515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3664" on line 340529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3665" on line 340569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3666" on line 340629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3667" on line 340681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3668" on line 340725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3669" on line 340749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_367" on line 340765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3670" on line 340985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3671" on line 341003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3672" on line 341045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3673" on line 341091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3674" on line 341133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3675" on line 341231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3676" on line 341243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3677" on line 341287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3678" on line 341317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3679" on line 341341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_368" on line 341389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3680" on line 341721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3681" on line 341745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3682" on line 341763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3684" on line 341817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3685" on line 341849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3686" on line 341875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3687" on line 341893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3688" on line 341933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3689" on line 341949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_369" on line 341965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3690" on line 342353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3691" on line 342425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3692" on line 342481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3693" on line 342531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3694" on line 342601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3695" on line 342639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3697" on line 342665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3698" on line 342679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3699" on line 342697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_37" on line 342725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_370" on line 343519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3700" on line 343869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3701" on line 343885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3702" on line 343915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3703" on line 343979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3704" on line 343995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3705" on line 344025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3706" on line 344067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3707" on line 344115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3708" on line 344189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3709" on line 344229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_371" on line 344291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3710" on line 344573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3711" on line 344583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3712" on line 344619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3713" on line 344627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3714" on line 344697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3715" on line 344725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3716" on line 344799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3717" on line 344855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3718" on line 344903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3719" on line 344935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_372" on line 344943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3721" on line 345285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3722" on line 345289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3723" on line 345317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3724" on line 345371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3725" on line 345427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3726" on line 345457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3727" on line 345463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3728" on line 345499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_373" on line 345529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3730" on line 345859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3731" on line 345883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3732" on line 345915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3733" on line 345963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3734" on line 345979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3735" on line 346019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3736" on line 346101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3737" on line 346169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3738" on line 346179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3739" on line 346183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_374" on line 346205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3740" on line 346385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3741" on line 346409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3742" on line 346443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3743" on line 346479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3744" on line 346539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3745" on line 346571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3746" on line 346599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3747" on line 346655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3748" on line 346667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3749" on line 346673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_375" on line 346695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3750" on line 347045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3751" on line 347079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3752" on line 347089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3753" on line 347119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3754" on line 347157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3755" on line 347193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3756" on line 347281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3757" on line 347349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3758" on line 347361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3759" on line 347379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_376" on line 347397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3760" on line 347999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3761" on line 348069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3762" on line 348079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3763" on line 348143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3764" on line 348197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3765" on line 348229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3766" on line 348237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3767" on line 348279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3768" on line 348303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3769" on line 348357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_377" on line 348371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3770" on line 348603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3771" on line 348631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3772" on line 348641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3774" on line 348657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3775" on line 348667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3776" on line 348689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3777" on line 348741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3778" on line 348809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3779" on line 348861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_378" on line 348865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3780" on line 349131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3781" on line 349165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3782" on line 349177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3783" on line 349213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3784" on line 349235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3785" on line 349255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3786" on line 349319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3787" on line 349337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3788" on line 349401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3789" on line 349429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_379" on line 349461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3790" on line 349753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3791" on line 349765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3792" on line 349799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3793" on line 349835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3794" on line 349851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3795" on line 349909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3796" on line 349965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3797" on line 349981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3799" on line 349999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_38" on line 350069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_380" on line 350895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3800" on line 351129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3801" on line 351143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3802" on line 351175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3803" on line 351209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3804" on line 351245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3805" on line 351285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3806" on line 351313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3807" on line 351331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3808" on line 351409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3809" on line 351471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_381" on line 351503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3810" on line 351711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3811" on line 351761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3812" on line 351767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3813" on line 351823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3814" on line 351875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3815" on line 351925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3816" on line 351947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3817" on line 352015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3818" on line 352061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3819" on line 352115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_382" on line 352157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3820" on line 352463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3821" on line 352493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3822" on line 352559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3823" on line 352615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3824" on line 352625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3825" on line 352677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3826" on line 352721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3827" on line 352743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3828" on line 352749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3829" on line 352755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_383" on line 352767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3830" on line 353107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3831" on line 353125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3832" on line 353149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3834" on line 353159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3835" on line 353231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3836" on line 353297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3837" on line 353303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3838" on line 353315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3839" on line 353355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_384" on line 353391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3840" on line 353775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3841" on line 353825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3842" on line 353849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3843" on line 353857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3844" on line 353915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3845" on line 353933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3846" on line 353979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3847" on line 353991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3848" on line 354047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3849" on line 354123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_385" on line 354131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3850" on line 354307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3851" on line 354341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3852" on line 354397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3853" on line 354443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3854" on line 354447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3855" on line 354483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3856" on line 354495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3857" on line 354515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3858" on line 354535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3859" on line 354555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_386" on line 354565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3860" on line 354873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3861" on line 354907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3862" on line 354919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3863" on line 354943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3864" on line 354981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3865" on line 355015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3866" on line 355049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3867" on line 355105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3868" on line 355131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3869" on line 355165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_387" on line 355207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3870" on line 355389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3871" on line 355427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3872" on line 355481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3873" on line 355527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3874" on line 355539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3875" on line 355565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3876" on line 355585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3877" on line 355623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3878" on line 355635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_388" on line 355649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3880" on line 356127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3881" on line 356175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3882" on line 356245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3883" on line 356259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3884" on line 356281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3885" on line 356381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3886" on line 356387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3887" on line 356431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3888" on line 356461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3889" on line 356479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_389" on line 356491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3890" on line 356867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3891" on line 356915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3892" on line 356951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3893" on line 357047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3895" on line 357093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3896" on line 357117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3897" on line 357129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3898" on line 357211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_39" on line 357247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_390" on line 358175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3900" on line 358493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3901" on line 358573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3902" on line 358595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3903" on line 358611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3904" on line 358655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3905" on line 358681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3906" on line 358699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3907" on line 358709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3908" on line 358771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3909" on line 358825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_391" on line 358885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3910" on line 359251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3911" on line 359323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3912" on line 359345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3913" on line 359367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3914" on line 359415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3915" on line 359475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3916" on line 359501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3917" on line 359537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3918" on line 359571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3919" on line 359639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_392" on line 359657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3920" on line 360031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3921" on line 360045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3922" on line 360085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3923" on line 360101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3924" on line 360123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3925" on line 360147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3926" on line 360169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3927" on line 360199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3928" on line 360207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3929" on line 360221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_393" on line 360227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3930" on line 360581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3931" on line 360599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3932" on line 360655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3934" on line 360669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3935" on line 360693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3936" on line 360737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3937" on line 360761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3938" on line 360781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3939" on line 360813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_394" on line 360843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3940" on line 361095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3943" on line 361131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3944" on line 361143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3945" on line 361185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3946" on line 361235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3947" on line 361325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3948" on line 361367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3949" on line 361391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_395" on line 361411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3950" on line 361649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3951" on line 361699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3952" on line 361735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3953" on line 361771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3954" on line 361781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3955" on line 361819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3956" on line 361885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3957" on line 361899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3958" on line 361953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3959" on line 361983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_396" on line 361999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3960" on line 362129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3961" on line 362197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3962" on line 362221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3963" on line 362255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3965" on line 362273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3966" on line 362303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3967" on line 362325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3968" on line 362353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3969" on line 362377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_397" on line 362425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3970" on line 362815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3971" on line 362851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3972" on line 362909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3973" on line 362919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3974" on line 363007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3975" on line 363045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3976" on line 363127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3977" on line 363151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3978" on line 363161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_398" on line 363209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3980" on line 363587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3981" on line 363621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3982" on line 363657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3983" on line 363663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3984" on line 363681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3985" on line 363707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3986" on line 363733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3987" on line 363795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3988" on line 363819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3989" on line 363867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_399" on line 363903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3990" on line 364259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3991" on line 364339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3992" on line 364357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3993" on line 364397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3994" on line 364401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3995" on line 364405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3996" on line 364429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3997" on line 364493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3998" on line 364565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_3999" on line 364579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4" on line 364631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_40" on line 366201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_400" on line 366947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4000" on line 367253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4001" on line 367277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4002" on line 367289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4003" on line 367301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4004" on line 367327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4005" on line 367339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4006" on line 367377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4007" on line 367403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4008" on line 367437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4009" on line 367453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_401" on line 367457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4010" on line 367765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4011" on line 367771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4013" on line 367819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4014" on line 367841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4015" on line 367863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4016" on line 367883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4017" on line 367897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4018" on line 367935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4019" on line 367973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_402" on line 367991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4020" on line 368259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4021" on line 368271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4022" on line 368323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4023" on line 368363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4024" on line 368387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4025" on line 368423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4026" on line 368439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4027" on line 368467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4028" on line 368477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4029" on line 368539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_403" on line 368599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4030" on line 368899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4031" on line 368967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4032" on line 368987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4033" on line 369009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4034" on line 369031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4035" on line 369079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4036" on line 369093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4037" on line 369121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4038" on line 369155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4039" on line 369165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_404" on line 369239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4041" on line 369661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4042" on line 369687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4043" on line 369711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4044" on line 369733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4046" on line 369793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4047" on line 369823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4048" on line 369863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4049" on line 369917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_405" on line 369939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4050" on line 370157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4051" on line 370225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4052" on line 370269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4053" on line 370311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4054" on line 370369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4055" on line 370423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4056" on line 370445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4057" on line 370465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4058" on line 370491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_406" on line 370527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4060" on line 370565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4061" on line 370571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4062" on line 370593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4063" on line 370627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4064" on line 370661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4065" on line 370703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4066" on line 370715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4067" on line 370743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4068" on line 370803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4069" on line 370825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_407" on line 370853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4070" on line 370991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4071" on line 371023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4073" on line 371081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4074" on line 371115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4075" on line 371121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4076" on line 371145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4077" on line 371167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4078" on line 371177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4079" on line 371193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_408" on line 371207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4080" on line 371453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4081" on line 371473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4082" on line 371487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4083" on line 371499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4084" on line 371513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4085" on line 371531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4086" on line 371557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4087" on line 371599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4088" on line 371631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4089" on line 371645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_409" on line 371657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4090" on line 371957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4091" on line 371979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4092" on line 372041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4093" on line 372109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4094" on line 372141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4095" on line 372163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4096" on line 372199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4097" on line 372219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4098" on line 372253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4099" on line 372301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_41" on line 372345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_410" on line 373363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4100" on line 373731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4101" on line 373745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4102" on line 373781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4103" on line 373793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4104" on line 373803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4105" on line 373833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4106" on line 373877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4107" on line 373921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4108" on line 373979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4109" on line 374005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_411" on line 374087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4110" on line 374405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4111" on line 374425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4112" on line 374459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4113" on line 374477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4114" on line 374497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4115" on line 374505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4116" on line 374511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4117" on line 374517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4118" on line 374541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4119" on line 374549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_412" on line 374581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4120" on line 374915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4121" on line 374969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4122" on line 374981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4123" on line 374987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4124" on line 375007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4125" on line 375041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4127" on line 375065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4129" on line 375069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_413" on line 375073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4130" on line 375373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4131" on line 375413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4132" on line 375451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4133" on line 375487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4134" on line 375503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4135" on line 375557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4136" on line 375595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4137" on line 375613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4138" on line 375671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4139" on line 375705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_414" on line 375767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4140" on line 375957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4141" on line 375965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4142" on line 375997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4143" on line 376031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4144" on line 376109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4145" on line 376151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4146" on line 376199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4147" on line 376225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4148" on line 376241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4149" on line 376265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_415" on line 376303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4150" on line 376535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4151" on line 376573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4152" on line 376593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4153" on line 376611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4155" on line 376621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4156" on line 376635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4157" on line 376651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4158" on line 376663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4159" on line 376687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_416" on line 376729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4161" on line 377051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4162" on line 377081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4163" on line 377097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4164" on line 377123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4165" on line 377135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4166" on line 377183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4167" on line 377213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4168" on line 377233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4169" on line 377299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_417" on line 377303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4170" on line 377693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4171" on line 377727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4172" on line 377775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4173" on line 377801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4174" on line 377827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4175" on line 377873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4177" on line 377887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4178" on line 377895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4179" on line 377923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_418" on line 377971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4180" on line 378267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4181" on line 378341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4182" on line 378347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4185" on line 378381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4186" on line 378385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4187" on line 378397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4188" on line 378403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4189" on line 378445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_419" on line 378493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4190" on line 378733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4191" on line 378749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4192" on line 378791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4193" on line 378823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4194" on line 378855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4195" on line 378893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4197" on line 378935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4198" on line 378955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4199" on line 378965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_42" on line 378977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_420" on line 379753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4200" on line 380003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4201" on line 380023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4202" on line 380073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4203" on line 380087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4204" on line 380105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4205" on line 380117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4206" on line 380145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4207" on line 380157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4208" on line 380199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4209" on line 380233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_421" on line 380255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4210" on line 380635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4211" on line 380677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4212" on line 380691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4213" on line 380697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4214" on line 380715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4215" on line 380733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4216" on line 380763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4217" on line 380767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4218" on line 380785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4219" on line 380799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_422" on line 380805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4220" on line 381051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4222" on line 381087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4223" on line 381101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4224" on line 381171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4225" on line 381179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4226" on line 381199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4227" on line 381221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4228" on line 381253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4229" on line 381267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_423" on line 381301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4230" on line 381737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4231" on line 381771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4232" on line 381795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4233" on line 381837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4234" on line 381857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4235" on line 381871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4236" on line 381925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4237" on line 381941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4238" on line 381975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4239" on line 382029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_424" on line 382041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4240" on line 382383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4241" on line 382411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4242" on line 382437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4243" on line 382459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4244" on line 382487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4245" on line 382511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4246" on line 382557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4247" on line 382591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4248" on line 382613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4249" on line 382635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_425" on line 382677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4250" on line 382815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4251" on line 382853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4252" on line 382933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4253" on line 382963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4254" on line 383037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4255" on line 383045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4256" on line 383057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4257" on line 383075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4258" on line 383107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4259" on line 383117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_426" on line 383139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4260" on line 383537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4261" on line 383567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4262" on line 383593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4263" on line 383613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4264" on line 383645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4265" on line 383671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4266" on line 383699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4267" on line 383725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4268" on line 383741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4269" on line 383751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_427" on line 383801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4270" on line 384239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4271" on line 384257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4272" on line 384323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4273" on line 384337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4274" on line 384387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4275" on line 384399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4276" on line 384443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4277" on line 384479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4278" on line 384499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4279" on line 384515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_428" on line 384547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4280" on line 385013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4281" on line 385017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4282" on line 385039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4283" on line 385069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4284" on line 385105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4285" on line 385121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4286" on line 385129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4287" on line 385159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4288" on line 385177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_429" on line 385181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4290" on line 385339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4291" on line 385379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4292" on line 385397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4293" on line 385431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4294" on line 385457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4295" on line 385501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4296" on line 385507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4297" on line 385519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4298" on line 385585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4299" on line 385607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_43" on line 385649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_430" on line 386327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4300" on line 386689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4301" on line 386759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4302" on line 386791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4303" on line 386851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4304" on line 386897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4305" on line 386923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4306" on line 386965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4307" on line 386975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4308" on line 386989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_431" on line 386995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4310" on line 387341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4311" on line 387357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4312" on line 387381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4313" on line 387405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4314" on line 387423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4315" on line 387431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4317" on line 387483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4318" on line 387505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4319" on line 387539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_432" on line 387547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4320" on line 387903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4321" on line 387915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4322" on line 387959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4323" on line 387995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4324" on line 388021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4325" on line 388063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4326" on line 388101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4327" on line 388137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4328" on line 388169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4329" on line 388197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_433" on line 388221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4330" on line 388473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4331" on line 388499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4333" on line 388509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4334" on line 388539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4336" on line 388581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4337" on line 388613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4338" on line 388631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4339" on line 388637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_434" on line 388645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4340" on line 388865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4341" on line 388881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4342" on line 388909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4343" on line 388951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4344" on line 388975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4345" on line 389031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4346" on line 389091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4347" on line 389127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4348" on line 389165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_435" on line 389177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4350" on line 389291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4351" on line 389317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4352" on line 389353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4353" on line 389387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4354" on line 389421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4355" on line 389459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4356" on line 389499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4357" on line 389513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4358" on line 389529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4359" on line 389545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_436" on line 389581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4360" on line 389693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4361" on line 389709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4362" on line 389729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4363" on line 389767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4364" on line 389811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4365" on line 389857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4366" on line 389887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4367" on line 389905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4368" on line 389909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4369" on line 389941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_437" on line 389947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4370" on line 390271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4371" on line 390299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4372" on line 390341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4373" on line 390369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4374" on line 390411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4375" on line 390461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4376" on line 390467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4377" on line 390473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4378" on line 390507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4379" on line 390521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_438" on line 390553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4380" on line 390781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4381" on line 390837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4382" on line 390855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4383" on line 390909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4384" on line 390917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4385" on line 390939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4387" on line 390973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4389" on line 390991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_439" on line 391017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4390" on line 391251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4391" on line 391259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4392" on line 391273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4393" on line 391301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4394" on line 391349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4395" on line 391395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4396" on line 391411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4397" on line 391453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4398" on line 391463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4399" on line 391477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_44" on line 391505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_440" on line 392257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4400" on line 392483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4401" on line 392499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4403" on line 392523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4404" on line 392551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4405" on line 392565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4406" on line 392619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4407" on line 392657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4408" on line 392699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4409" on line 392705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_441" on line 392737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4410" on line 393013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4411" on line 393049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4412" on line 393081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4413" on line 393129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4414" on line 393147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4415" on line 393165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4416" on line 393175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4417" on line 393187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4418" on line 393191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4419" on line 393227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_442" on line 393281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4420" on line 393635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4421" on line 393649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4422" on line 393653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4423" on line 393695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4424" on line 393715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4425" on line 393735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4426" on line 393791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4427" on line 393831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4428" on line 393857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4429" on line 393893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_443" on line 393915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4431" on line 394013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4432" on line 394063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4433" on line 394087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4434" on line 394109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4435" on line 394123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4436" on line 394147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4437" on line 394197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4438" on line 394207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4439" on line 394211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_444" on line 394227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4440" on line 394431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4441" on line 394447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4442" on line 394491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4443" on line 394509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4444" on line 394553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4445" on line 394565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4446" on line 394575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4447" on line 394605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4448" on line 394635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4449" on line 394699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_445" on line 394721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4450" on line 394995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4451" on line 395059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4452" on line 395083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4453" on line 395107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4454" on line 395129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4455" on line 395151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4456" on line 395193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4457" on line 395207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4458" on line 395229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4459" on line 395291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_446" on line 395325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4460" on line 395505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4461" on line 395513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4462" on line 395543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4464" on line 395573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4465" on line 395637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4466" on line 395675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4468" on line 395705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4469" on line 395711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_447" on line 395733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4470" on line 396025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4472" on line 396059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4473" on line 396065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4474" on line 396113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4475" on line 396153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4476" on line 396203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4477" on line 396237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4478" on line 396247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4479" on line 396261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_448" on line 396283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4480" on line 396547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4481" on line 396583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4482" on line 396597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4483" on line 396649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4484" on line 396685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4485" on line 396703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4486" on line 396733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4487" on line 396763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4488" on line 396791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4489" on line 396817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_449" on line 396865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4490" on line 397177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4491" on line 397191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4492" on line 397235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4493" on line 397257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4494" on line 397267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4495" on line 397283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4496" on line 397307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4497" on line 397327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4498" on line 397353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4499" on line 397367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_45" on line 397381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_450" on line 398121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4500" on line 398341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4501" on line 398369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4502" on line 398379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4503" on line 398387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4504" on line 398415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4505" on line 398427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4506" on line 398469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4507" on line 398481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4508" on line 398501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4509" on line 398547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_451" on line 398575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4510" on line 398681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4511" on line 398721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4512" on line 398751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4513" on line 398761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4514" on line 398783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4515" on line 398817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4516" on line 398847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4517" on line 398859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4518" on line 398881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4519" on line 398895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_452" on line 398915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4520" on line 399343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4521" on line 399349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4522" on line 399365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4523" on line 399369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4524" on line 399427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4525" on line 399439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4526" on line 399465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4527" on line 399469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4528" on line 399481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_453" on line 399487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4530" on line 399983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4531" on line 399997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4532" on line 400013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4533" on line 400023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4534" on line 400051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4535" on line 400069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4536" on line 400099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4537" on line 400129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4539" on line 400133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_454" on line 400139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4541" on line 400443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4542" on line 400471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4543" on line 400475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4544" on line 400489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4545" on line 400519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4547" on line 400539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4548" on line 400563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4549" on line 400595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_455" on line 400629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4550" on line 401187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4551" on line 401225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4552" on line 401233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4553" on line 401241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4554" on line 401267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4555" on line 401299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4556" on line 401355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4557" on line 401367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4558" on line 401427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4559" on line 401439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_456" on line 401455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4560" on line 401885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4561" on line 401891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4562" on line 401895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4563" on line 401977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4564" on line 402001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4565" on line 402025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4566" on line 402057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4567" on line 402069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4568" on line 402081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4569" on line 402113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_457" on line 402137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4570" on line 402317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4571" on line 402331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4572" on line 402359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4573" on line 402377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4574" on line 402393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4575" on line 402425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4576" on line 402457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4577" on line 402481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4578" on line 402501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4579" on line 402519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_458" on line 402533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4580" on line 402741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4581" on line 402779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4582" on line 402805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4583" on line 402813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4584" on line 402843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4585" on line 402857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4586" on line 402883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4587" on line 402913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4588" on line 402937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4589" on line 402949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_459" on line 403005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4590" on line 403471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4591" on line 403543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4592" on line 403557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4593" on line 403563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4594" on line 403591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4595" on line 403603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4596" on line 403651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4597" on line 403667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4598" on line 403709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4599" on line 403761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_46" on line 403779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_460" on line 404313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4600" on line 404485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4601" on line 404517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4602" on line 404535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4603" on line 404583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4604" on line 404601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4605" on line 404669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4606" on line 404707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4607" on line 404763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4608" on line 404785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4609" on line 404805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_461" on line 404823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4610" on line 405047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4611" on line 405071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4612" on line 405091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4613" on line 405095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4614" on line 405105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4615" on line 405135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4616" on line 405169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4617" on line 405197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4618" on line 405221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4619" on line 405233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_462" on line 405273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4620" on line 405495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4621" on line 405501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4622" on line 405511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4623" on line 405521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4624" on line 405529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4625" on line 405549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4626" on line 405579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4627" on line 405617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4628" on line 405647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4629" on line 405679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_463" on line 405701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4630" on line 405937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4631" on line 405971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4632" on line 405987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4633" on line 405995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4634" on line 405999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4635" on line 406027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4636" on line 406043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4637" on line 406065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4638" on line 406077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_464" on line 406081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4640" on line 406191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4641" on line 406217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4642" on line 406235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4644" on line 406247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4646" on line 406253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4647" on line 406273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4648" on line 406287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4649" on line 406293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_465" on line 406341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4650" on line 406497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4651" on line 406515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4652" on line 406523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4653" on line 406567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4654" on line 406595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4655" on line 406623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4656" on line 406627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4657" on line 406645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4658" on line 406665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4659" on line 406691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_466" on line 406705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4660" on line 406911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4661" on line 406917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4662" on line 406933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4663" on line 406949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4664" on line 406961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4665" on line 406979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4666" on line 407019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4668" on line 407025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4669" on line 407047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_467" on line 407081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4671" on line 407297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4672" on line 407317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4673" on line 407341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4674" on line 407365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4675" on line 407375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4676" on line 407389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4677" on line 407419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4678" on line 407423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4679" on line 407449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_468" on line 407479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4680" on line 407719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4682" on line 407725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4683" on line 407741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4684" on line 407795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4685" on line 407821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4686" on line 407863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4688" on line 407919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4689" on line 407923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_469" on line 407927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4690" on line 408273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4691" on line 408307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4692" on line 408341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4693" on line 408361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4694" on line 408383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4696" on line 408415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4697" on line 408431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4698" on line 408435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4699" on line 408441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_47" on line 408475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_470" on line 409139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4700" on line 409417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4701" on line 409449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4702" on line 409463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4704" on line 409511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4705" on line 409549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4706" on line 409555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4707" on line 409565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4708" on line 409571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4709" on line 409597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_471" on line 409657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4710" on line 409959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4711" on line 409965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4712" on line 409971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4713" on line 410003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4714" on line 410029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4715" on line 410043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4716" on line 410059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4717" on line 410079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4718" on line 410093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4719" on line 410101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_472" on line 410141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4720" on line 410397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4721" on line 410401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4722" on line 410409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4723" on line 410419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4724" on line 410425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4725" on line 410437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4726" on line 410441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4727" on line 410491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4728" on line 410541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4729" on line 410553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_473" on line 410565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4731" on line 410663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4732" on line 410669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4733" on line 410681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4734" on line 410695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4735" on line 410707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4736" on line 410731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4737" on line 410751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4738" on line 410763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4739" on line 410787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_474" on line 410821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4740" on line 411249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4741" on line 411279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4742" on line 411309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4743" on line 411323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4745" on line 411341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4746" on line 411347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4747" on line 411373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4748" on line 411391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4749" on line 411405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_475" on line 411423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4750" on line 411487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4751" on line 411521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4752" on line 411543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4753" on line 411575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4754" on line 411583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4757" on line 411603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4758" on line 411647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4759" on line 411709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_476" on line 411717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4760" on line 411957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4762" on line 411963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4763" on line 411985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4764" on line 412027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4765" on line 412071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4766" on line 412081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4767" on line 412085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4769" on line 412101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_477" on line 412127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4770" on line 412459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4771" on line 412467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4772" on line 412483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4773" on line 412535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4774" on line 412553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4775" on line 412585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4776" on line 412597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4777" on line 412637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4778" on line 412651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4779" on line 412687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_478" on line 412715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4780" on line 413145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4781" on line 413165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4782" on line 413185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4784" on line 413195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4785" on line 413217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4789" on line 413261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_479" on line 413277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4790" on line 413509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4791" on line 413523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4792" on line 413529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4793" on line 413551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4794" on line 413579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4796" on line 413609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4797" on line 413615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4799" on line 413629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_48" on line 413689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_480" on line 414443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4800" on line 414607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4801" on line 414627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4804" on line 414643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4805" on line 414657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4806" on line 414703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4807" on line 414713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4808" on line 414729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4809" on line 414745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_481" on line 414757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4810" on line 414883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4811" on line 414907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4812" on line 414937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4814" on line 414981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4816" on line 415013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4818" on line 415029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_482" on line 415067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4820" on line 415241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4821" on line 415283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4823" on line 415293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4824" on line 415345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4825" on line 415385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4826" on line 415411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4827" on line 415451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4828" on line 415497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4829" on line 415529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_483" on line 415571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4830" on line 415733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4832" on line 415767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4834" on line 415781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4835" on line 415785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4836" on line 415831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4837" on line 415839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4838" on line 415851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4839" on line 415877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_484" on line 415895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4840" on line 416399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4841" on line 416423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4842" on line 416471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4843" on line 416483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4844" on line 416527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4845" on line 416541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4846" on line 416551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4847" on line 416577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4848" on line 416585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4849" on line 416627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_485" on line 416649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4850" on line 416843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4852" on line 416889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4853" on line 416919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4854" on line 416929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4855" on line 416939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4856" on line 416955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4857" on line 416959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4858" on line 416967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4859" on line 416977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_486" on line 416993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4861" on line 417185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4863" on line 417215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4864" on line 417229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4865" on line 417235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4866" on line 417245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4869" on line 417263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_487" on line 417275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4870" on line 417417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4871" on line 417449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4872" on line 417463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4873" on line 417491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4874" on line 417499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4875" on line 417511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4877" on line 417517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4878" on line 417521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4879" on line 417555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_488" on line 417577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4880" on line 417817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4881" on line 417839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4882" on line 417867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4883" on line 417891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4885" on line 417939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4886" on line 417977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4887" on line 417999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_489" on line 418023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4892" on line 418267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4893" on line 418309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4894" on line 418319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4895" on line 418361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4896" on line 418403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4897" on line 418409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4899" on line 418453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_49" on line 418465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_490" on line 419395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4900" on line 419619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4901" on line 419637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4902" on line 419665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4903" on line 419687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4904" on line 419725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4905" on line 419759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4906" on line 419773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4907" on line 419787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4908" on line 419799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_491" on line 419819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4910" on line 420019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4911" on line 420045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4913" on line 420065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4914" on line 420109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4915" on line 420115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4916" on line 420133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4917" on line 420145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4918" on line 420161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4919" on line 420197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_492" on line 420205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4920" on line 420661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4921" on line 420689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4922" on line 420707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4923" on line 420737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4924" on line 420765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4925" on line 420771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4926" on line 420787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4927" on line 420795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4928" on line 420805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4929" on line 420815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_493" on line 420829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4931" on line 421109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4933" on line 421123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4934" on line 421141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4935" on line 421183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4936" on line 421195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4937" on line 421205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4938" on line 421221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4939" on line 421247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_494" on line 421287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4940" on line 421603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4941" on line 421645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4942" on line 421655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4943" on line 421665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4945" on line 421693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4946" on line 421709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4947" on line 421755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4948" on line 421785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4949" on line 421793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_495" on line 421831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4950" on line 421909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4951" on line 421933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4953" on line 421941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4954" on line 421989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4955" on line 422013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4956" on line 422049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4957" on line 422069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4958" on line 422081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4959" on line 422113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_496" on line 422143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4960" on line 422429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4961" on line 422437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4962" on line 422457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4963" on line 422481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4964" on line 422493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4965" on line 422505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4966" on line 422525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4967" on line 422559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_497" on line 422603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4970" on line 422933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4972" on line 422941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4973" on line 422997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4974" on line 423001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4975" on line 423009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4976" on line 423013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4977" on line 423025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4978" on line 423039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4979" on line 423093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_498" on line 423119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4980" on line 423395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4981" on line 423439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4982" on line 423445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4983" on line 423487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4984" on line 423499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4986" on line 423521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4987" on line 423535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4988" on line 423559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4989" on line 423631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_499" on line 423661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4990" on line 423965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4991" on line 423975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4992" on line 424011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4993" on line 424019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4994" on line 424041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4995" on line 424045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4996" on line 424069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4997" on line 424089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4998" on line 424107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_4999" on line 424111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5" on line 424135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_50" on line 425835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_500" on line 426501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5000" on line 426735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5001" on line 426741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5002" on line 426769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5003" on line 426793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5004" on line 426805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5005" on line 426833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5006" on line 426845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5007" on line 426853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5008" on line 426863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5009" on line 426871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_501" on line 426883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5010" on line 427131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5011" on line 427147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5012" on line 427195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5013" on line 427203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5014" on line 427235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5015" on line 427243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5016" on line 427265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5017" on line 427269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5018" on line 427287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5019" on line 427295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_502" on line 427303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5020" on line 427609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5021" on line 427643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5022" on line 427689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5023" on line 427723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5024" on line 427729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5026" on line 427783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5027" on line 427819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5028" on line 427863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_503" on line 427871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5031" on line 428059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5032" on line 428077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5033" on line 428081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5034" on line 428103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5035" on line 428129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5036" on line 428151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5037" on line 428167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5038" on line 428201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_504" on line 428217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5040" on line 428495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5041" on line 428503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5042" on line 428541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5043" on line 428565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5044" on line 428585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5046" on line 428617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5047" on line 428631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5048" on line 428651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5049" on line 428661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_505" on line 428689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5050" on line 428931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5051" on line 428953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5052" on line 428969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5053" on line 428981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5054" on line 429011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5055" on line 429033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5056" on line 429075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5057" on line 429103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5058" on line 429115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5059" on line 429151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_506" on line 429159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5060" on line 429247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5061" on line 429269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5062" on line 429295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5063" on line 429309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5064" on line 429327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5065" on line 429349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5066" on line 429375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5067" on line 429433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5068" on line 429439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5069" on line 429475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_507" on line 429497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5071" on line 429731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5072" on line 429755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5073" on line 429775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5075" on line 429795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5076" on line 429807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5077" on line 429819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5078" on line 429831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_508" on line 429845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5080" on line 430171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5081" on line 430201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5082" on line 430213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5083" on line 430221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5084" on line 430243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5085" on line 430261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5086" on line 430283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5088" on line 430305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5089" on line 430321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_509" on line 430329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5090" on line 430709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5091" on line 430715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5092" on line 430729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5093" on line 430741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5094" on line 430771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5095" on line 430801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5097" on line 430807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5098" on line 430853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5099" on line 430873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_51" on line 430899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_510" on line 431843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5100" on line 432067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5101" on line 432091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5102" on line 432105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5103" on line 432123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5104" on line 432127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5105" on line 432135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5106" on line 432157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5107" on line 432167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5108" on line 432185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5109" on line 432217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_511" on line 432223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5110" on line 432483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5112" on line 432495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5114" on line 432513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5115" on line 432545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5116" on line 432587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5117" on line 432601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5118" on line 432613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5119" on line 432639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_512" on line 432659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5120" on line 432889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5122" on line 432919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5123" on line 432935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5124" on line 432939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5125" on line 432943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5126" on line 432955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5127" on line 432981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5128" on line 433009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_513" on line 433029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5130" on line 433109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5131" on line 433115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5132" on line 433137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5133" on line 433155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5134" on line 433183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5135" on line 433225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5136" on line 433241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5137" on line 433281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5139" on line 433305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_514" on line 433309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5140" on line 433497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5141" on line 433501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5142" on line 433507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5143" on line 433533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5146" on line 433543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5147" on line 433569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5148" on line 433583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5149" on line 433621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_515" on line 433627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5150" on line 433897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5151" on line 433901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5152" on line 433911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5154" on line 433915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5155" on line 433939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5157" on line 433951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5158" on line 433965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5159" on line 433983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_516" on line 433995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5161" on line 434227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5162" on line 434247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5164" on line 434265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5166" on line 434283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5167" on line 434305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5168" on line 434327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5169" on line 434339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_517" on line 434361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5170" on line 434651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5171" on line 434661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5172" on line 434701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5173" on line 434719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5174" on line 434727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5175" on line 434745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5176" on line 434801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5177" on line 434807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5178" on line 434825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5179" on line 434843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_518" on line 434857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5180" on line 434997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5181" on line 435001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5182" on line 435029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5184" on line 435051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5186" on line 435073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5187" on line 435105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5189" on line 435125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_519" on line 435145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5191" on line 435411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5192" on line 435427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5193" on line 435453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5194" on line 435471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5195" on line 435495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5196" on line 435539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5198" on line 435561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5199" on line 435579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_52" on line 435599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_520" on line 436121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5200" on line 436385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5201" on line 436411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5203" on line 436417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5204" on line 436439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5205" on line 436445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5206" on line 436459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5207" on line 436481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5208" on line 436505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5209" on line 436527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_521" on line 436539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5211" on line 436663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5212" on line 436681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5213" on line 436695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5214" on line 436717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5215" on line 436737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5216" on line 436757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5217" on line 436767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5218" on line 436789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5219" on line 436793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_522" on line 436803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5220" on line 436951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5221" on line 436983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5223" on line 436989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5224" on line 437001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5225" on line 437011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5227" on line 437041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_523" on line 437085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5230" on line 437341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5232" on line 437375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5233" on line 437401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5234" on line 437427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5235" on line 437455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5236" on line 437467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5237" on line 437475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5238" on line 437483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5239" on line 437503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_524" on line 437507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5240" on line 437807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5242" on line 437817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5244" on line 437835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5246" on line 437843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5247" on line 437861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5248" on line 437873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5249" on line 437879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_525" on line 437883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5250" on line 438131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5251" on line 438137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5253" on line 438187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5254" on line 438193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5255" on line 438215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5256" on line 438241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5257" on line 438251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5258" on line 438281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5259" on line 438297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_526" on line 438315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5260" on line 438401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5262" on line 438415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5263" on line 438419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5264" on line 438423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5265" on line 438437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5266" on line 438457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5267" on line 438469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5268" on line 438477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_527" on line 438483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5270" on line 438675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5271" on line 438709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5272" on line 438723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5273" on line 438739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5274" on line 438757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5275" on line 438763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5276" on line 438807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5278" on line 438827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5279" on line 438839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_528" on line 438869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5280" on line 438959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5281" on line 438989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5285" on line 439001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5286" on line 439025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5288" on line 439035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5289" on line 439073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_529" on line 439103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5290" on line 439471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5293" on line 439487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5294" on line 439491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5295" on line 439501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5296" on line 439505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5297" on line 439513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5298" on line 439537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5299" on line 439563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_53" on line 439569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_530" on line 440375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5300" on line 440573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5301" on line 440579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5302" on line 440593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5304" on line 440603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5305" on line 440617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5307" on line 440625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5308" on line 440647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5309" on line 440673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_531" on line 440679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5310" on line 440853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5311" on line 440881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5312" on line 440899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5313" on line 440903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5314" on line 440921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5315" on line 440937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5316" on line 440967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5317" on line 440981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5319" on line 440995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_532" on line 441003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5320" on line 441297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5321" on line 441321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5322" on line 441335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5323" on line 441345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5324" on line 441355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5325" on line 441383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5326" on line 441405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5329" on line 441439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_533" on line 441445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5330" on line 441697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5331" on line 441701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5333" on line 441705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5334" on line 441733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5335" on line 441757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5336" on line 441763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5337" on line 441777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5338" on line 441799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5339" on line 441807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_534" on line 441817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5341" on line 441971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5342" on line 441987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5343" on line 442003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5344" on line 442021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5345" on line 442049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5346" on line 442071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5347" on line 442083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5348" on line 442091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5349" on line 442099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_535" on line 442111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5350" on line 442497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5352" on line 442557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5354" on line 442585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5355" on line 442607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5357" on line 442645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5358" on line 442655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5359" on line 442677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_536" on line 442685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5360" on line 442861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5361" on line 442879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5362" on line 442901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5364" on line 442913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5365" on line 442923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5367" on line 442933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5368" on line 442963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5369" on line 442987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_537" on line 443009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5370" on line 443421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5371" on line 443425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5372" on line 443439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5373" on line 443461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5374" on line 443465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5375" on line 443485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5377" on line 443525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5378" on line 443547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5379" on line 443563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_538" on line 443585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5380" on line 443831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5381" on line 443839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5383" on line 443853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5385" on line 443877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5387" on line 443883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5388" on line 443891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5389" on line 443895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_539" on line 443925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5390" on line 444079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5391" on line 444103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5392" on line 444121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5393" on line 444135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5394" on line 444147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5395" on line 444185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5396" on line 444201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5397" on line 444209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5398" on line 444219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5399" on line 444225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_54" on line 444247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_540" on line 444925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5400" on line 445245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5401" on line 445253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5402" on line 445271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5404" on line 445291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5405" on line 445297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5406" on line 445327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5407" on line 445351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5408" on line 445355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5409" on line 445393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_541" on line 445405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5410" on line 445657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5411" on line 445687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5412" on line 445713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5414" on line 445723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5415" on line 445739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5416" on line 445759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5417" on line 445771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5418" on line 445781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5419" on line 445799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_542" on line 445827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5421" on line 446099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5422" on line 446143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5425" on line 446159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5426" on line 446175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5429" on line 446189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_543" on line 446199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5430" on line 446359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5432" on line 446363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5433" on line 446371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5435" on line 446377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5437" on line 446381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_544" on line 446387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5440" on line 446581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5441" on line 446587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5442" on line 446593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5444" on line 446599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5446" on line 446605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5447" on line 446611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5448" on line 446623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5449" on line 446629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_545" on line 446649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5450" on line 447037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5451" on line 447055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5452" on line 447065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5453" on line 447089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5454" on line 447099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5455" on line 447111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5458" on line 447141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5459" on line 447179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_546" on line 447191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5460" on line 447311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5461" on line 447315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5463" on line 447329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5464" on line 447339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5466" on line 447343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5467" on line 447367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5469" on line 447397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_547" on line 447409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5470" on line 447633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5471" on line 447645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5472" on line 447683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5473" on line 447695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5474" on line 447711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5475" on line 447745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5476" on line 447757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5477" on line 447777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5478" on line 447799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_548" on line 447811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5480" on line 447955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5481" on line 447981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5482" on line 447993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5483" on line 448007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5484" on line 448025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5485" on line 448047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5487" on line 448061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5488" on line 448079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_549" on line 448085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5490" on line 448219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5491" on line 448247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5492" on line 448251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5494" on line 448255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5495" on line 448265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5497" on line 448287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5498" on line 448315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5499" on line 448329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_55" on line 448345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_550" on line 448931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5500" on line 449191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5501" on line 449211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5502" on line 449227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5503" on line 449237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5504" on line 449257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5507" on line 449271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5508" on line 449313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5509" on line 449317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_551" on line 449325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5510" on line 449391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5511" on line 449407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5513" on line 449419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5514" on line 449433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5515" on line 449443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5518" on line 449465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5519" on line 449495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_552" on line 449511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5521" on line 449663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5522" on line 449669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5523" on line 449683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5524" on line 449703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5525" on line 449721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5526" on line 449725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5527" on line 449735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5528" on line 449743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5529" on line 449751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_553" on line 449769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5531" on line 450035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5532" on line 450049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5534" on line 450069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5535" on line 450093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5536" on line 450113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5539" on line 450121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_554" on line 450141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5540" on line 450367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5542" on line 450389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5543" on line 450407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5544" on line 450423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5545" on line 450429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5546" on line 450441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5547" on line 450473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5548" on line 450489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_555" on line 450495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5550" on line 450775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5553" on line 450783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5554" on line 450817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5556" on line 450825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5557" on line 450831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5558" on line 450835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5559" on line 450851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_556" on line 450873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5561" on line 451125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5563" on line 451147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5564" on line 451167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5565" on line 451179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5567" on line 451203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5569" on line 451215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_557" on line 451219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5570" on line 451469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5571" on line 451479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5573" on line 451489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5575" on line 451507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5576" on line 451537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5577" on line 451555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5578" on line 451589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5579" on line 451605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_558" on line 451625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5580" on line 451749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5584" on line 451765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5585" on line 451789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5586" on line 451793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5588" on line 451809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5589" on line 451815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_559" on line 451819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5590" on line 451955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5592" on line 451961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5593" on line 451971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5594" on line 451985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5598" on line 452001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_56" on line 452009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_560" on line 452711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5600" on line 453023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5601" on line 453043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5607" on line 453047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5608" on line 453055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5609" on line 453067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_561" on line 453077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5610" on line 453339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5611" on line 453347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5613" on line 453367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5614" on line 453379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5616" on line 453405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5617" on line 453417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5618" on line 453431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5619" on line 453447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_562" on line 453465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5621" on line 453579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5623" on line 453617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5624" on line 453627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5625" on line 453651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5626" on line 453669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5628" on line 453687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_563" on line 453715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5630" on line 453991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5631" on line 453999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5632" on line 454017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5636" on line 454029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5638" on line 454045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5639" on line 454061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_564" on line 454091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5640" on line 454233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5642" on line 454243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5643" on line 454273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5644" on line 454279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5646" on line 454289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5647" on line 454307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5649" on line 454331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_565" on line 454347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5651" on line 454533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5652" on line 454537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5653" on line 454541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5654" on line 454553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5655" on line 454565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5656" on line 454589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5657" on line 454605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_566" on line 454615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5660" on line 454717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5661" on line 454753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5663" on line 454783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5664" on line 454789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5666" on line 454795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5667" on line 454811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_567" on line 454821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5670" on line 455121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5673" on line 455133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5677" on line 455143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5678" on line 455149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5679" on line 455159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_568" on line 455183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5680" on line 455365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5681" on line 455377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5684" on line 455383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5686" on line 455401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5687" on line 455405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5688" on line 455415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5689" on line 455429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_569" on line 455441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5690" on line 455837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5691" on line 455851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5692" on line 455861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5694" on line 455875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5695" on line 455881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5697" on line 455891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5699" on line 455911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_57" on line 455917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_570" on line 456633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5700" on line 456759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5701" on line 456777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5702" on line 456787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5703" on line 456797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5706" on line 456805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5707" on line 456809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5708" on line 456815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5709" on line 456821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_571" on line 456835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5710" on line 457001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5711" on line 457017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5713" on line 457033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5714" on line 457039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5716" on line 457051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5717" on line 457063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5719" on line 457073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_572" on line 457083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5720" on line 457317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5721" on line 457333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5723" on line 457337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5724" on line 457345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5725" on line 457349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5726" on line 457363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5727" on line 457389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5728" on line 457401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5729" on line 457405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_573" on line 457409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5730" on line 457599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5731" on line 457619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5733" on line 457627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5734" on line 457645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5736" on line 457649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5738" on line 457659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5739" on line 457667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_574" on line 457677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5740" on line 457861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5741" on line 457873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5742" on line 457881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5743" on line 457887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5745" on line 457893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5746" on line 457897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_575" on line 457911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5752" on line 458137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5754" on line 458145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5756" on line 458155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_576" on line 458165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5761" on line 458341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5763" on line 458361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5764" on line 458377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5765" on line 458383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5769" on line 458399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_577" on line 458405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5773" on line 458711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5774" on line 458723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5775" on line 458731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5778" on line 458741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5779" on line 458757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_578" on line 458765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5781" on line 458949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5782" on line 458969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5783" on line 458977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5784" on line 458983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5785" on line 459003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5788" on line 459013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5789" on line 459025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_579" on line 459031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5790" on line 459171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5791" on line 459177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5792" on line 459195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5794" on line 459203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5795" on line 459215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5796" on line 459227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5797" on line 459239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_58" on line 459245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_580" on line 460023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5801" on line 460229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5802" on line 460249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5804" on line 460275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5805" on line 460295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5806" on line 460305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5809" on line 460311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_581" on line 460321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5810" on line 460425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5811" on line 460439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5813" on line 460463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5814" on line 460469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5815" on line 460473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5816" on line 460479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5817" on line 460483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5818" on line 460505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_582" on line 460511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5821" on line 460813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5822" on line 460825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5824" on line 460845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5825" on line 460871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5826" on line 460881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5828" on line 460893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5829" on line 460903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_583" on line 460925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5830" on line 461459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5833" on line 461469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5836" on line 461473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5838" on line 461481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_584" on line 461495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5840" on line 461681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5843" on line 461693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5846" on line 461697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5848" on line 461701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_585" on line 461715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5850" on line 461965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5853" on line 461973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5857" on line 461989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5859" on line 462007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_586" on line 462017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5860" on line 462469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5861" on line 462483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5862" on line 462499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5863" on line 462507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5864" on line 462513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5866" on line 462537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5868" on line 462541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5869" on line 462547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_587" on line 462559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5875" on line 462719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5877" on line 462723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5878" on line 462729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_588" on line 462735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5882" on line 462907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5883" on line 462917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5884" on line 462925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5885" on line 462931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5887" on line 462939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5888" on line 462951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5889" on line 462961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_589" on line 462965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5892" on line 463205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5894" on line 463209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5895" on line 463223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5898" on line 463229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5899" on line 463241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_59" on line 463249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_590" on line 463889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5901" on line 464223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5904" on line 464227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_591" on line 464251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5911" on line 464583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5914" on line 464595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5916" on line 464625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5919" on line 464631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_592" on line 464635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5920" on line 464901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5921" on line 464909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5922" on line 464923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5925" on line 464933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5926" on line 464945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5927" on line 464957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5928" on line 464977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_593" on line 464989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5930" on line 465259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5931" on line 465283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5937" on line 465297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5938" on line 465303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5939" on line 465317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_594" on line 465325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5940" on line 465573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5944" on line 465577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5947" on line 465581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5949" on line 465589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_595" on line 465595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5952" on line 465773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5953" on line 465787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5954" on line 465803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5959" on line 465813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_596" on line 465817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5960" on line 466069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5963" on line 466075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5965" on line 466091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5968" on line 466099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5969" on line 466109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_597" on line 466113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5971" on line 466379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5974" on line 466407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_598" on line 466411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5980" on line 466581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5981" on line 466585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5982" on line 466589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5983" on line 466601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_599" on line 466615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5991" on line 466939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5992" on line 466949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5993" on line 466953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_5995" on line 466965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6" on line 466995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_60" on line 468591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_600" on line 469179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6001" on line 469295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6002" on line 469299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6003" on line 469305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6004" on line 469313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6006" on line 469325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6007" on line 469329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6008" on line 469339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6009" on line 469343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_601" on line 469347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6010" on line 469437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6015" on line 469449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6016" on line 469455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6017" on line 469467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_602" on line 469475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6020" on line 469759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6021" on line 469787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6023" on line 469793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6024" on line 469811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6026" on line 469823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6027" on line 469831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6029" on line 469837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_603" on line 469841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6031" on line 470003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6032" on line 470013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6035" on line 470019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6036" on line 470041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6037" on line 470047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6038" on line 470053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6039" on line 470057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_604" on line 470065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6040" on line 470347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6041" on line 470359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6042" on line 470365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6043" on line 470369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6045" on line 470373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6049" on line 470377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_605" on line 470389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6050" on line 470629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6053" on line 470637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6057" on line 470647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_606" on line 470659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6061" on line 470929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6062" on line 470935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6063" on line 470943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6065" on line 470965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6066" on line 470973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6069" on line 470987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_607" on line 470993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6073" on line 471341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6074" on line 471349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6075" on line 471363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6077" on line 471375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6078" on line 471381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6079" on line 471389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_608" on line 471399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6082" on line 471617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6083" on line 471621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6084" on line 471635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6085" on line 471643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6086" on line 471647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6088" on line 471653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_609" on line 471667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6090" on line 471997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6092" on line 472003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6093" on line 472021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6094" on line 472027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6095" on line 472035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6096" on line 472053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6099" on line 472061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_61" on line 472079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_610" on line 472667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6103" on line 472933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6104" on line 472939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6109" on line 472943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_611" on line 472951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6114" on line 473195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6115" on line 473201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6116" on line 473209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6117" on line 473221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6118" on line 473247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6119" on line 473251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_612" on line 473259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6120" on line 473575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6121" on line 473591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6122" on line 473601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6125" on line 473607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6126" on line 473621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6127" on line 473625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6128" on line 473641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6129" on line 473649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_613" on line 473659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6131" on line 474027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6133" on line 474033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6134" on line 474043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6135" on line 474061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6136" on line 474073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_614" on line 474087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6145" on line 474155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6146" on line 474165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6147" on line 474173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6148" on line 474185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_615" on line 474191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6151" on line 474303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6152" on line 474309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6153" on line 474319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6155" on line 474329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6157" on line 474335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6159" on line 474345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_616" on line 474353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6160" on line 474563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6162" on line 474575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6163" on line 474591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6164" on line 474595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6165" on line 474605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6166" on line 474615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6167" on line 474619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6168" on line 474629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6169" on line 474637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_617" on line 474643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6171" on line 474785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6174" on line 474805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6175" on line 474809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6176" on line 474813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6179" on line 474821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_618" on line 474827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6181" on line 475021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6182" on line 475029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6183" on line 475033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6185" on line 475047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6189" on line 475057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_619" on line 475071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6190" on line 475245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6195" on line 475257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6196" on line 475265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6197" on line 475277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_62" on line 475289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_620" on line 476383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6200" on line 476463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6201" on line 476469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6203" on line 476483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6204" on line 476493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6208" on line 476499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6209" on line 476505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_621" on line 476517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6210" on line 476695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6211" on line 476701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6212" on line 476727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6214" on line 476737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6215" on line 476745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6216" on line 476753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6219" on line 476757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_622" on line 476763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6220" on line 476955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6221" on line 476963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6222" on line 476971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6224" on line 476983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6225" on line 476991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6228" on line 476995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6229" on line 476999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_623" on line 477005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6231" on line 477269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6234" on line 477275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6237" on line 477281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6238" on line 477285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_624" on line 477291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6240" on line 477577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6241" on line 477603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6242" on line 477609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6243" on line 477625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6245" on line 477635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_625" on line 477641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6252" on line 477889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6256" on line 477899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_626" on line 477907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_627" on line 478057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6274" on line 478299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6279" on line 478311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_628" on line 478315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6280" on line 478651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6283" on line 478659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6284" on line 478683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6285" on line 478697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6286" on line 478703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6287" on line 478709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6289" on line 478727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_629" on line 478731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6290" on line 478911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6291" on line 478917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6293" on line 478921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6295" on line 478929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6297" on line 478947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6298" on line 478955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_63" on line 478973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_630" on line 479477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6300" on line 479747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6304" on line 479751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6307" on line 479757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6309" on line 479763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_631" on line 479769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6310" on line 480015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6311" on line 480031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6314" on line 480035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_632" on line 480043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6320" on line 480233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6322" on line 480237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6326" on line 480241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_633" on line 480247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6331" on line 480385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6333" on line 480393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6339" on line 480399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_634" on line 480405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6340" on line 480559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6341" on line 480573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6344" on line 480581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6348" on line 480587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6349" on line 480597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_635" on line 480601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6350" on line 480787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6352" on line 480793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6355" on line 480805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6358" on line 480811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_636" on line 480819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6361" on line 481009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6363" on line 481013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6365" on line 481017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6366" on line 481025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6368" on line 481031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6369" on line 481035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_637" on line 481043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6370" on line 481283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6371" on line 481295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6372" on line 481311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6373" on line 481319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6376" on line 481325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_638" on line 481335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6384" on line 481493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6389" on line 481497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_639" on line 481501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6393" on line 481705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6394" on line 481713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6396" on line 481733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6398" on line 481741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_64" on line 481747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_640" on line 482703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6400" on line 482873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6402" on line 482891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_641" on line 482895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6412" on line 483053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6414" on line 483059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6418" on line 483069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_642" on line 483075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6421" on line 483211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6425" on line 483225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6427" on line 483233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_643" on line 483241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6430" on line 483449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6432" on line 483453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6436" on line 483469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6437" on line 483475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_644" on line 483485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6441" on line 483855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6442" on line 483869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6445" on line 483889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6449" on line 483897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_645" on line 483903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6451" on line 484119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6452" on line 484125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6455" on line 484133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6457" on line 484143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6458" on line 484147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6459" on line 484153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_646" on line 484159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6461" on line 484369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_647" on line 484377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6472" on line 484585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6473" on line 484591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6475" on line 484599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6478" on line 484603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_648" on line 484613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6487" on line 484789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_649" on line 484793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6491" on line 484901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6492" on line 484905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6494" on line 484919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6497" on line 484933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_65" on line 484939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_650" on line 486057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6500" on line 486261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6501" on line 486265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_651" on line 486271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6511" on line 486631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6514" on line 486637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6517" on line 486641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_652" on line 486647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6525" on line 486869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_653" on line 486875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6530" on line 487123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6533" on line 487131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6534" on line 487139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6536" on line 487151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6539" on line 487159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_654" on line 487165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6544" on line 487281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6547" on line 487285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_655" on line 487291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_656" on line 487405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6560" on line 487571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6564" on line 487577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6569" on line 487583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_657" on line 487591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6571" on line 487857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6576" on line 487863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6578" on line 487871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6579" on line 487887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_658" on line 487901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6583" on line 488053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6586" on line 488059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6589" on line 488063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_659" on line 488071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6596" on line 488459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6598" on line 488467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_66" on line 488471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_660" on line 488857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6604" on line 489109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6607" on line 489113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6608" on line 489119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_661" on line 489123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6610" on line 489371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_662" on line 489377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6621" on line 489693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6623" on line 489697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6624" on line 489705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6625" on line 489713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_663" on line 489727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6630" on line 489915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6633" on line 489921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6634" on line 489927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6635" on line 489941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6636" on line 489947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_664" on line 489957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6643" on line 490123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6644" on line 490131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6645" on line 490141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6647" on line 490153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_665" on line 490157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6651" on line 490389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6653" on line 490395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6654" on line 490399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_666" on line 490407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6661" on line 490651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6663" on line 490655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_667" on line 490659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6679" on line 490793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_668" on line 490801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6682" on line 491051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6687" on line 491057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6688" on line 491063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_669" on line 491067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6692" on line 491291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6693" on line 491295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6694" on line 491305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6696" on line 491309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_67" on line 491317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_670" on line 492267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6700" on line 492547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6704" on line 492553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6706" on line 492557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6707" on line 492561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_671" on line 492575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6718" on line 492773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6719" on line 492779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_672" on line 492783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6724" on line 492977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6727" on line 492981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6729" on line 492989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_673" on line 492995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6737" on line 493099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6739" on line 493109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_674" on line 493113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6741" on line 493319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_675" on line 493325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6756" on line 493525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6757" on line 493533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_676" on line 493541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6762" on line 493727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6763" on line 493733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6768" on line 493739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6769" on line 493749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_677" on line 493755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6770" on line 494021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6772" on line 494025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6778" on line 494033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6779" on line 494037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_678" on line 494047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6781" on line 494269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_679" on line 494275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6790" on line 494397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6791" on line 494403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6794" on line 494409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6795" on line 494423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6799" on line 494431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_68" on line 494437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_680" on line 495459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6804" on line 495623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6805" on line 495629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6809" on line 495635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_681" on line 495645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6810" on line 495903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6812" on line 495907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6816" on line 495911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_682" on line 495921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6829" on line 496349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_683" on line 496355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6831" on line 496557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6834" on line 496565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6835" on line 496571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6837" on line 496579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_684" on line 496589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6843" on line 496861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6844" on line 496867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_685" on line 496875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6850" on line 497047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_686" on line 497055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6862" on line 497241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6864" on line 497255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6865" on line 497277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6869" on line 497283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_687" on line 497295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6877" on line 497601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6878" on line 497605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_688" on line 497609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6889" on line 497809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_689" on line 497815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6890" on line 498017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_69" on line 498033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_690" on line 498503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6900" on line 498707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6903" on line 498713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6904" on line 498717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6906" on line 498723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6907" on line 498729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_691" on line 498735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6912" on line 498881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_692" on line 498887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6922" on line 499027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6923" on line 499035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6924" on line 499041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6929" on line 499047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_693" on line 499057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6930" on line 499259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6932" on line 499263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_694" on line 499269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6944" on line 499443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6946" on line 499451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_695" on line 499465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6952" on line 499631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6954" on line 499635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6958" on line 499645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_696" on line 499653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6961" on line 499885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6963" on line 499889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6964" on line 499899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6968" on line 499903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6969" on line 499913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_697" on line 499919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6971" on line 500093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6973" on line 500097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6974" on line 500111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6975" on line 500119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6979" on line 500125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_698" on line 500129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6981" on line 500267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6985" on line 500275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6988" on line 500283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_699" on line 500289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_6997" on line 500589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7" on line 500597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_70" on line 501751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_700" on line 502423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7002" on line 502603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7004" on line 502607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7009" on line 502615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_701" on line 502621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7011" on line 502785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7012" on line 502791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7013" on line 502807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7019" on line 502813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_702" on line 502819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7020" on line 503093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7026" on line 503097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_703" on line 503101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7036" on line 503229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_704" on line 503239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7041" on line 503455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7045" on line 503459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7048" on line 503465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_705" on line 503471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7058" on line 503637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_706" on line 503641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7060" on line 503913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7065" on line 503921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_707" on line 503929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7074" on line 504335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_708" on line 504347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7080" on line 504563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_709" on line 504573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7090" on line 504691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7093" on line 504697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7097" on line 504703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7098" on line 504707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7099" on line 504711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_71" on line 504717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_710" on line 505269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7102" on line 505513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7109" on line 505527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_711" on line 505531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7111" on line 505759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7113" on line 505765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7115" on line 505769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7116" on line 505777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_712" on line 505785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7121" on line 506059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7123" on line 506065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7126" on line 506071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_713" on line 506079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_714" on line 506255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7144" on line 506461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_715" on line 506465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7158" on line 506545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_716" on line 506551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7161" on line 506831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7162" on line 506839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7165" on line 506845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7169" on line 506853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_717" on line 506859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7170" on line 506961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7174" on line 506967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7178" on line 506973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_718" on line 506981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7185" on line 507239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7188" on line 507243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_719" on line 507249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7190" on line 507355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7191" on line 507361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_72" on line 507367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_720" on line 508203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7200" on line 508443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7203" on line 508451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7204" on line 508459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_721" on line 508465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7210" on line 508623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7211" on line 508629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7214" on line 508635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7219" on line 508641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_722" on line 508649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7220" on line 508835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_723" on line 508839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7230" on line 508993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7233" on line 509001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7234" on line 509005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7235" on line 509009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7239" on line 509013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_724" on line 509017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7240" on line 509193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7243" on line 509199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7246" on line 509211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_725" on line 509215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7253" on line 509461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7254" on line 509471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_726" on line 509479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7263" on line 509847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_727" on line 509853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_728" on line 510029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7282" on line 510269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7283" on line 510275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7285" on line 510281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7289" on line 510285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_729" on line 510289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7294" on line 510397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_73" on line 510407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_730" on line 510813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7309" on line 510965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_731" on line 510973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7312" on line 511185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7315" on line 511191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7318" on line 511195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7319" on line 511211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_732" on line 511217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7320" on line 511427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7325" on line 511431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7327" on line 511441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7328" on line 511445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_733" on line 511449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_734" on line 511827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7342" on line 511881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_735" on line 511887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7356" on line 512161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7358" on line 512165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7359" on line 512169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_736" on line 512177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7366" on line 512375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_737" on line 512379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7371" on line 512641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7374" on line 512647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7376" on line 512657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_738" on line 512661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7383" on line 512941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7384" on line 512947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_739" on line 512951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7390" on line 513005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7391" on line 513013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_74" on line 513019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_740" on line 513509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7400" on line 513807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_741" on line 513811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_742" on line 514047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7424" on line 514235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7429" on line 514239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_743" on line 514243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7433" on line 514457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_744" on line 514461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7447" on line 514615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_745" on line 514621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7452" on line 514709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7459" on line 514719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_746" on line 514733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_747" on line 514841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7479" on line 515061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_748" on line 515069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_749" on line 515223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7494" on line 515385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_75" on line 515389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_750" on line 516043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7505" on line 516301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7508" on line 516307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_751" on line 516315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7515" on line 516603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_752" on line 516609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7520" on line 516841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7523" on line 516847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7527" on line 516853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_753" on line 516857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7532" on line 517007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_754" on line 517015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7545" on line 517129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_755" on line 517135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7550" on line 517217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_756" on line 517227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7564" on line 517449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_757" on line 517453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7573" on line 517739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7575" on line 517745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_758" on line 517755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_759" on line 517945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7597" on line 518151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_76" on line 518157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_760" on line 518913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7601" on line 519095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7604" on line 519099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7608" on line 519109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_761" on line 519115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_762" on line 519261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7628" on line 519395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_763" on line 519405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7639" on line 519533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_764" on line 519543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7644" on line 519795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7645" on line 519801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_765" on line 519807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7651" on line 519973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7653" on line 519977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_766" on line 519981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7660" on line 520087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7667" on line 520097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7669" on line 520103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_767" on line 520107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7672" on line 520371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7679" on line 520377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_768" on line 520383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7680" on line 520561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_769" on line 520567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_77" on line 520849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_770" on line 521587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_771" on line 521753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7711" on line 521871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7718" on line 521881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_772" on line 521885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7720" on line 521995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7723" on line 522001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_773" on line 522009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7734" on line 522187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7737" on line 522191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_774" on line 522199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7748" on line 522397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_775" on line 522401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7754" on line 522625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_776" on line 522629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7769" on line 522745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_777" on line 522751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7776" on line 522891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7778" on line 522901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_778" on line 522905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7783" on line 523205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_779" on line 523209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_78" on line 523397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_780" on line 523843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7801" on line 524065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7805" on line 524073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_781" on line 524077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7813" on line 524463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_782" on line 524473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_783" on line 524601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7835" on line 524801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7838" on line 524805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_784" on line 524811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7841" on line 524931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7847" on line 524935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_785" on line 524941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7857" on line 525143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_786" on line 525147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_787" on line 525331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_788" on line 525619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_789" on line 525877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7890" on line 526045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_79" on line 526049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_790" on line 526623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_791" on line 526769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7911" on line 526959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7917" on line 526963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_792" on line 526969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7924" on line 527143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7929" on line 527149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_793" on line 527153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7935" on line 527275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7936" on line 527279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_794" on line 527285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7943" on line 527549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7947" on line 527553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_795" on line 527561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7953" on line 527773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_796" on line 527781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_797" on line 527861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7975" on line 527939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_798" on line 527945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7982" on line 528113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7988" on line 528117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_799" on line 528121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_7993" on line 528269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8" on line 528275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_80" on line 529789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_800" on line 530531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8000" on line 530753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8004" on line 530761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_801" on line 530765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_802" on line 530845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_803" on line 531099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8039" on line 531229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_804" on line 531235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8045" on line 531477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8049" on line 531481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_805" on line 531485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8054" on line 531577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_806" on line 531581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_807" on line 531665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8071" on line 531757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_808" on line 531765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8084" on line 531837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_809" on line 531845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8091" on line 532031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8098" on line 532035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_81" on line 532039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_810" on line 532541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8104" on line 532759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_811" on line 532765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8110" on line 532879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8114" on line 532889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_812" on line 532893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8123" on line 533061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_813" on line 533067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8134" on line 533111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8138" on line 533121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_814" on line 533125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_815" on line 533295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_816" on line 533425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8167" on line 533587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_817" on line 533591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8175" on line 533687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_818" on line 533691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8180" on line 533797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_8182" on line 533801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_819" on line 533805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_82" on line 534011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_820" on line 534509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_821" on line 534701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_822" on line 534889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_823" on line 534943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_824" on line 535043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_825" on line 535203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_826" on line 535345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_827" on line 535471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_828" on line 535525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_829" on line 535677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_83" on line 535823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_830" on line 536241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_831" on line 536423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_832" on line 536623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_833" on line 536757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_834" on line 536871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_835" on line 537061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_836" on line 537189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_837" on line 537379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_838" on line 537593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_839" on line 537697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_84" on line 537889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_840" on line 538523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_841" on line 538679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_842" on line 538933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_843" on line 539073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_844" on line 539185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_845" on line 539329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_846" on line 539499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_847" on line 539597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_848" on line 539737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_849" on line 539983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_85" on line 540159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_850" on line 540929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_851" on line 541153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_852" on line 541321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_853" on line 541529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_854" on line 541705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_855" on line 541959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_856" on line 542137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_857" on line 542291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_858" on line 542423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_859" on line 542585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_86" on line 542701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_860" on line 543125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_861" on line 543293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_862" on line 543413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_863" on line 543627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_864" on line 544015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_865" on line 544317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_866" on line 544399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_867" on line 544633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_868" on line 544751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_869" on line 544813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_87" on line 544895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_870" on line 545123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_871" on line 545263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_872" on line 545585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_873" on line 545759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_874" on line 545915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_875" on line 546085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_876" on line 546279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_877" on line 546491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_878" on line 546639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_879" on line 546791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_88" on line 546817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_880" on line 547503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_881" on line 547635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_882" on line 547821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_883" on line 547901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_884" on line 548077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_885" on line 548255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_886" on line 548489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_887" on line 548675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_888" on line 548783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_889" on line 548927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_89" on line 548993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_890" on line 549259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_891" on line 549329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_892" on line 549531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_893" on line 549757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_894" on line 549895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_895" on line 549941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_896" on line 550087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_897" on line 550357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_898" on line 550435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_899" on line 550681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_9" on line 550809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_90" on line 552483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_900" on line 553231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_901" on line 553393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_902" on line 553611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_903" on line 553855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_904" on line 553969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_905" on line 554181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_906" on line 554383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_907" on line 554527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_908" on line 554695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_909" on line 554751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_91" on line 554811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_910" on line 555223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_911" on line 555383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_912" on line 555465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_913" on line 555657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_914" on line 555789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_915" on line 555973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_916" on line 556053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_917" on line 556163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_918" on line 556365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_919" on line 556675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_92" on line 556757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_920" on line 557345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_921" on line 557579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_922" on line 557731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_923" on line 557925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_924" on line 558049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_925" on line 558287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_926" on line 558455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_927" on line 558723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_928" on line 558921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_929" on line 559079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_93" on line 559223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_930" on line 559667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_931" on line 559797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_932" on line 559959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_933" on line 560183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_934" on line 560327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_935" on line 560413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_936" on line 560629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_937" on line 560853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_938" on line 560909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_939" on line 560975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_94" on line 561229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_940" on line 561829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_941" on line 561881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_942" on line 562179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_943" on line 562361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_944" on line 562451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_945" on line 562525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_946" on line 562661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_947" on line 562849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_948" on line 562977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_949" on line 563283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_95" on line 563391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_950" on line 564157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_951" on line 564289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_952" on line 564573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_953" on line 564655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_954" on line 564793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_955" on line 564947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_956" on line 565083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_957" on line 565253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_958" on line 565421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_959" on line 565629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_96" on line 565787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_960" on line 566235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_961" on line 566425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_962" on line 566603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_963" on line 566851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_964" on line 566961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_965" on line 567065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_966" on line 567227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_967" on line 567481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_968" on line 567525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_969" on line 567709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_97" on line 567807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_970" on line 568313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_971" on line 568615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_972" on line 568805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_973" on line 568971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_974" on line 569009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_975" on line 569195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_976" on line 569401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_977" on line 569583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_978" on line 569749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_979" on line 569905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_98" on line 570049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_980" on line 570217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_981" on line 570427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_982" on line 570465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_983" on line 570613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_984" on line 570673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_985" on line 570889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_986" on line 570949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_987" on line 571119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_988" on line 571289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_989" on line 571331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_99" on line 571471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_990" on line 571867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_991" on line 572011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_992" on line 572181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_993" on line 572341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_994" on line 572563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_995" on line 572775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_996" on line 573073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_997" on line 573199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_998" on line 573415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: seqid "Porites_evermani_scaffold_999" on line 573513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has not been previously introduced with a "##sequence-region" line, create such a line automatically
warning: CDS feature on line 327513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 140963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 140967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 140969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 96959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 96955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 96999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 142969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 142995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 142993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 128991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 128993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 128997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 23989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 23983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 134041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 134033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 134031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 211995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 222947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 222943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 222941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 172979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 172991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 172997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 59105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 59103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 57269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 57275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 488839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 491919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 482673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 485969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 486001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 485981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 486055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 486053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 498469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 50035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 61611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 61615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 61617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 483463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 483483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 522395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 507347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 482889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 482893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 503085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 488461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 518129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 518147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 518149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 517115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 517123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 516295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 516285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 516283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 515023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 515055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 514019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 514041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 514039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 488055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 487879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 487861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 523987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 526035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 525875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 393959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 393989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 394379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 392471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 392481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 392479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 520563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 408265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 408267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 408271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 407715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 407717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 410357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 410389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 410395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 409415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 409413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 403465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 403469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 401145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 401141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 379929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 379987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 380987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 380995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 380999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 520091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 520089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 274171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 274169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 274165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 112309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 112319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 112323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 381071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 381077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 519541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 519539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 382863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 382925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 382929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 8961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 8987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 8999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 10141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 10137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 10133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 492559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 492569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 492567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 4985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 4983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 4981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 6095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 6101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 6113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 397285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 397303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 104001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 104041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 104031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 394997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 394999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 395603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 395589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 395511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 484609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 484593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 484597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 303179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 303175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 451729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 451741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 450333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 450361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 450365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 396569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 396577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 396581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 449169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 449163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 22005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 22001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 22023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 448217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 448215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 448207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 523207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 447601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 447631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 446351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 446353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 446357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 445195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 445243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 459165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 459167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 458327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 458303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 458339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 457301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 457313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 521879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 456741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 456749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 456753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 521999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 452895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 452887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 452885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 399993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 399995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 400065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 400135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 400137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 431995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 431999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 398411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 398417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 398425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 244007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 244013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 244011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 185185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 185175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 491315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 439557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 522193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 155245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 155243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 155241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 439473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 522399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 494273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 438195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 438209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 438135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 494041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 494043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 493539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 493753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 489111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 391491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 391501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 490133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 390469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 390501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 390505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 436975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 436977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 436981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 489939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 437851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 437811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 502793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 211015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 211029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 72215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 72229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 72231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 368331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 368353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 368359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 367961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 367959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 302171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 302179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 302183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 301499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 301497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 300643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 300651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 300667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 299405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 299413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 298695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 298701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 298703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 297125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 297139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 295985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 295987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 296193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 296201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 296203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 504339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 78625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 78621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 78619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 357137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 357239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 357245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 444243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 444231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 444223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 503237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 328053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 328049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 328063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 325773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 325815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 326493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 326497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 326999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 327337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 327345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 327347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 322663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 322661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 322659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 323985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 323995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 324229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 324247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 324259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 321181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 321179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 348951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 348995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 348987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 349119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 349113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 343855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 343853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 344989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 344987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 344985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 345267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 345279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 345275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 347037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 347039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 347043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 346383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 346367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 346361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 341989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 341997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 341999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 342345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 342349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 342351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 340979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 340981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 340983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 336955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 336953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 336949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 339839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 339841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 337995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 337991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 337989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 338535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 338671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 338667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 369087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 369083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 369081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 443919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 443921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 443923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 361083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 361077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 360015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 360027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 360029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 359237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 359241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 359247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 358457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 358489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 358491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 363547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 363533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 362797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 362805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 362801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 355985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 355983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 355981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 356829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 356861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 356859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 502613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 350967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 350995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 350999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 502617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 490795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 286957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 286993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 286999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 440671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 440587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 440585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 526967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 490401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 504693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 384327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 384331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 384335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 473637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 473639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 504715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 293059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 293057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 463207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 463211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 292127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 292153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 292139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 383633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 383629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 383627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 291135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 291139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 527151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 527147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 290523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 290543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 290561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 354085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 354063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 354061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 385091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 385127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 289263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 289261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 353343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 353311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 353313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 462519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 462505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 442549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 442551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 442555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 288115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 288121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 288125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 462721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 441319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 441313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 352053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 287549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 287543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 351999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 351989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 352003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 352009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 386977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 386969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 386991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 319049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 319033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 314541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 314523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 314525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 179989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 179999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 178851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 178839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 178835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 180989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 180995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 180999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 181133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 181183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 184375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 184401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 184413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 182965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 182987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 182993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 183243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 183245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 317009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 317039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 174777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 174795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 174793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 173571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 173577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 177339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 177345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 175981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 175985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 176247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 176253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 176255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 265019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 265021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 316065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 316017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 316007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 315969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 315977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 199991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 199953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 506851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 294353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 294363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 294359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 210269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 210285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 210283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 209529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 209541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 209549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 208657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 208679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 208685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 207681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 207675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 206343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 206351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 206359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 190133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 190127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 190119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 191551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 191549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 187993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 187999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 188991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 188995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 188999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 189073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 189083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 186855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 186865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 186867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 200563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 200621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 200629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 192979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 192991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 201937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 201949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 202825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 202887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 202901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 221511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 221515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 221521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 218977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 218991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 218997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 219263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 219261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 220503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 220507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 220509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 245997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 245999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 246049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 246065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 246101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 250143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 250147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 250157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 248983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 248977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 248975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 249161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 249159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 247953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 247959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 203999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 203997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 506063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 204485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 430259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 430319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 430315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 254241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 254285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 254301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 253543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 253561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 252597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 252607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 252609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 251915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 251919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 234985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 234995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 234999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 235995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 235997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 239957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 239991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 236977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 236979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 236999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 237995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 237991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 238061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 238057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 238055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 204989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 204999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 205787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 205817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 387917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 387905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 243943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 243949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 320373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 320381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 320389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 240985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 240981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 240979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 241987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 241985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 242451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 242453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 242457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 387997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 267381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 267393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 266625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 266633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 266629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 268439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 268433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 268431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 269993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 269999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 270115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 270127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 270123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 506463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 271455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 271459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 272991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 272993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 272999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 273091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 273105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 273107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 505779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 255981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 255993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 256987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 256991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 256999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 257175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 257995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 258997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 258995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 258991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 259993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 259997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 259999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 260221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 260225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 260253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 261621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 261633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 261635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 505775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 262573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 262567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 262559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 263511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 263509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 263507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 264965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 264971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 264969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 389063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 389083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 318487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 318481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 318479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 388559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 388577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 388575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 280975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 280995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 280997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 278749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 278751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 278753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 279531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 279523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 276547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 276545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 276543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 277787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 277785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 275719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 275741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 281989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 281987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 364993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 364985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 364981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 365997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 365993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 366183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 366197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 366193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 424997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 424995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 424991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 425811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 425805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 467983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 467999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 468553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 468587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 468589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 500961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 500955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 500953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 501739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 501747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 528985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 528997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 528999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 529705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 529689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 550993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 550997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 550999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 551991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 551983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 552455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 552433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 552479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 23 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 59 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 57 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 1993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 1995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 1999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 2225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 2229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 2231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 170939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 170937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 170935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 171605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 171607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 171609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 426855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 285637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 285649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 285647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 426849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 426847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 497257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 497291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 497293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 475051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 475027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 475023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 474807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 474793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 474787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 507245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 507247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 498885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 498883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 313537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 313553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 313561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 378937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 378951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 378949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 499265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 499267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 499261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 419595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 419607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 419615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 420657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 420655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 420651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 416839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 416999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 416995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 417803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 417811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 417807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 418237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 418247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 418261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 377933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 377963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 377969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 429001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 429027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 429021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 413137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 413141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 413143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 412435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 412447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 412457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 414859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 414879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 414877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 411479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 411483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 411485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 415719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 415715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 415731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 127065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 127111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 127003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 427735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 427779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 427725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 469473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 469459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 469457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 421553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 421551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 421519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 422409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 422421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 422425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 423383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 423391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 423393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 428535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 428537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 428539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 573065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 573067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 573069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 29063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 29065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 29081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 572535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 572559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 572557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 406051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 406067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 7743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 7769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 7773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 406079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 9737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 9775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 9777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 3893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 3905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 3903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 5881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 5883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 5885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 14991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 14995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 14999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 15213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 15229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 15231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 16993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 16997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 16999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 17257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 17287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 17289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 11519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 11517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 11513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 12991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 12977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 12975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 13171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 13173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 13175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 18987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 18983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 18981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 19355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 19361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 19365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 20991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 20997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 20999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 21363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 21359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 21357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 510283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 33157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 33155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 33153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 231079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 464969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 169587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 169627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 169625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 231007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 231011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 464985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 464979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 230895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 230931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 230937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 31031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 31049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 31051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 403003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 309619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 309549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 309547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 232337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 232343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 232345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 402895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 402893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 402891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 308041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 308049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 308055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 404539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 404529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 404533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 216959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 216883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 216915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 217179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 217177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 217173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 35425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 35433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 35447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 307829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 307831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 307837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 214901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 214993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 214999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 215189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 215203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 215211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 306183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 306185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 306189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 405059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 405087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 405089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 108047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 108107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 108103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 106987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 106993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 106999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 107071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 107081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 107083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 111397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 111399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 111401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 109967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 109993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 109999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 110065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 110089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 110091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 98979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 98995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 98999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 99041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 99057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 99067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 97859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 97869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 97877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 101993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 101983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 101999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 102211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 102209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 102207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 100627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 100687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 100685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 105763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 105771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 105767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 103935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 103951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 103959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 42995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 42997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 42999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 43015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 43017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 43019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 435563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 435577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 435573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 152917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 152927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 152925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 153975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 153995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 153999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 154541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 154545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 154547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 150797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 150811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 150819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 151809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 151817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 151821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 508453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 508455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 143393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 143415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 143417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 144503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 144513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 144531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 148987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 148991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 148999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 149351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 149347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 149345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 145807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 145809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 145811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 146971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 146993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 146999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 147107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 147117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 147141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 141367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 141375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 141381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 139875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 139887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 139885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 138695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 138693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 138673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 137291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 137303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 137301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 131009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 131003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 130963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 130949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 130947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 129531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 129537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 129535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 136289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 136391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 136393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 135363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 135361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 135359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 133771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 133765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 133777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 131999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 132519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 132547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 132545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 60401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 60431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 60429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 52973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 53005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 53003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 53001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 52997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 52993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 54587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 54581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 54609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 55985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 55995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 55997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 56783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 56781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 56779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 508837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 58725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 58727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 58729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 45985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 45993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 45999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 46533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 46535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 46537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 47985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 47987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 47999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 48175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 48179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 48185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 49839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 49855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 49853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 50999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 50997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 51425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 51459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 51461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 44525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 44615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 44613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 509213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 41775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 41777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 41779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 36387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 36409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 36411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 34795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 34799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 34805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 39959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 39987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 39993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 40089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 40091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 40095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 37997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 37991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 37989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 38171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 38239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 38241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 28931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 28937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 28947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 27121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 27129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 27127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 32911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 32933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 32931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 30833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 30829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 30845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 311831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 311861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 311867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 233177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 233195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 233201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 509201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 79953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 79945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 79939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 229939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 229947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 229949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 77523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 77535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 77533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 76117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 76127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 76135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 74983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 74995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 74993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 75013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 75009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 75003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 73409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 73423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 73421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 71835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 71843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 71849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 69997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 69993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 69991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 70225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 70241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 70239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 68887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 68895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 68893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 66999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 66989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 66985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 67359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 67363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 67399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 64985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 64995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 64999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 65193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 65199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 65205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 62989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 62999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 62997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 63445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 63443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 63441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 310291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 310355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 310353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 312157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 312193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 312195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 481707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 481735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 434829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 434837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 434841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 536961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 536947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 536941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 432891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 432913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 432911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 540987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 540989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 540999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 541689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 541697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 541701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 537873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 537883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 537885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 538995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 538983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 538999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 539319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 539325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 539327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 161977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 161987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 161999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 162261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 162275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 162283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 167161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 167167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 167169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 166087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 166085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 166083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 168745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 168761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 168765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 542409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 542415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 542421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 471397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 471387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 544299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 544311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 544313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 543613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 543619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 543625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 470941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 470977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 470933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 472055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 472063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 121993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 121995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 121999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 122153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 122151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 122147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 123499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 123517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 123523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 124971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 124969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 124967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 125233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 125245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 125243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 126793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 126787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 126845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 531203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 531215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 530751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 471999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 472001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 113857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 113861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 113863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 114981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 114997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 114999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 115317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 115325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 115327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 116699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 116715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 116713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 117967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 117975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 117999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 118077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 118081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 118085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 119423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 119419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 119417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 120769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 120777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 120781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 495637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 160137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 160139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 160141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 495627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 495625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 159911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 159925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 159935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 305095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 305083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 305081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 479755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 479765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 479767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 213029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 213053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 496559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 213013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 496567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 158523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 158515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 158499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 212921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 212919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 212917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 533563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 535039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 535035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 535033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 304829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 534685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 534695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 534699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 304671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 304675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 372103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 372105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 372107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 496351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 165727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 165731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 165735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 533063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 533065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 480571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 480593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 480589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 433913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 163931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 163935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 163937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 164211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 164221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 164225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 433623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 156989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 156995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 156999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 24997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 24993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 24991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 25103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 25105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 25113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 549315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 549319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 549327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 157415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 157419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 157421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 548477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 548481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 548485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 370701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 510401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 370711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 433993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 547811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 547809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 547819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 545945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 545995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 545993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 532883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 532887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 546409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 546485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 546489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 509851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 532891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 370993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 371091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 26643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 26639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 26637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 371119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 371117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 196383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 196387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 513007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 513009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 513011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 86459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 86469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 86473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 192997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 373829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 373989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 373985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 196999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 460817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 460815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 193779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 193767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 193761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 83197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 83245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 83249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 374949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 374979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 82393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 82389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 82385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 460319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 374997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 87923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 87993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 87999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 461467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 461465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 461461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 91975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 91997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 91999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 92027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 92035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 92045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 225355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 225375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 225385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 90313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 90335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 90339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 89195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 89209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 89229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 228507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 228513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 228521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 88649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 88675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 88677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 329775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 329777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 329779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 510967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 93963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 93985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 93999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 226991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 226985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 226983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 227255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 227285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 227283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 511433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 94987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 94983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 94981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 95079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 95083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 95099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 511885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 511883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 375959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 375961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 375963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 197983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 197981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 197979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 198069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 198087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 198097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 376053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 376035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 376033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 455877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 478309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 478301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 455869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 478313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 455845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 334973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 334993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 334999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 335221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 335225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 335229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 194977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 194967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 194963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 195125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 195129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 195133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 481499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 526047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 284215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 284241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 284245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 563383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 563387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 563389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 562655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 562657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 562659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 561221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 561223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 561227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 560381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 560379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 560377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 454767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 454743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 454751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 567197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 567207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 567215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 566941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 566957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 566951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 282891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 282889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 282915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 283069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 283127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 283123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 525145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 565067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 565061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 565059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 564651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 564649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 564647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 554167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 554175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 554179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 553371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 553389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 553391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 453593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 453589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 453581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 559077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 559075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 559071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 558233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 558279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 558265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 557567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 557573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 557577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 524467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 556001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 556047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 556051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 555349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 555345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 555343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 223895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 223893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 223889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 331023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 331029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 331031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 330901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 330907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 330917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 476755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 476743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 524809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 524803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 333071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 333061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 333059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 530755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 530759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 477599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 476997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 224487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 224515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 224517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332175 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 332253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 332119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 332117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571149 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571195 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 571109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 571115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 571117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84459 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 85161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 85169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 85167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 465797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 477891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 477895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 465785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84839 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84799 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 84801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 84815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 84813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 465809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568321 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568427 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568433 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568583 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568589 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568823 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568833 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568849 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568871 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568911 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568793 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568733 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568801 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 531483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569751 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569757 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569763 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569769 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569779 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569783 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569785 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569787 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569789 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569791 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569797 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569795 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569803 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569805 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569807 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569809 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569811 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569813 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569815 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569817 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569819 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569821 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569831 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569829 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569827 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569825 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569835 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569837 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569841 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569843 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569845 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569847 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569851 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569853 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569855 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569857 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569859 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569861 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569863 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569865 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569877 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569881 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569585 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569605 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569603 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569599 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569693 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569695 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569701 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569705 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569711 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569713 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569745 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569907 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569921 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569947 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569963 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 570019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 570025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 570045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569109 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569091 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569075 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569069 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569061 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569053 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569051 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569049 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569047 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569143 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569165 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569179 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568989 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 568977 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 568975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568973 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 568999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569421 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569443 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569455 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569501 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569491 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569483 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569481 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569469 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569517 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569523 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569539 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569543 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569545 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569553 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569555 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569201 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569213 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569219 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569221 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569247 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569245 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569265 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569283 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569285 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569311 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569323 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569357 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569349 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569345 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569339 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569333 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 569363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569371 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 569393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 569395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466105 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466101 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 512653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466083 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 512945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81715 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81717 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81719 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81721 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81723 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81725 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81727 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81729 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81731 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81743 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81741 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81739 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81737 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81735 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81747 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81749 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81755 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81753 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81759 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81761 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81767 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81765 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81771 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81773 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81775 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81777 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81781 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 512949 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81435 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81437 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81439 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81441 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81445 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81447 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81449 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81451 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81453 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81457 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81461 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81463 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81465 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81467 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81471 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81473 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81475 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81477 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81479 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466383 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466387 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466391 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 466395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 466405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81373 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81375 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81377 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81379 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81381 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81385 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81389 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81419 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81417 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81415 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81413 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81411 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81407 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81405 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81403 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81401 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81399 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81397 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81395 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81393 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81423 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81425 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81431 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81429 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81557 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81559 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81561 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81563 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81565 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81567 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81569 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81571 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81573 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81575 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81577 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81579 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81581 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81587 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81597 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81595 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81593 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81591 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81601 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81691 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81689 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81687 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81685 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81683 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81681 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81679 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81677 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81675 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81673 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81671 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81669 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81667 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81665 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81663 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81661 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81659 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81657 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81655 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81653 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81651 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81649 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81647 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81645 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81643 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81641 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81639 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81637 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81635 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81633 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81631 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81629 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81627 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81625 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81623 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81621 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81619 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81617 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81615 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81613 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81611 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81609 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81607 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81697 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81699 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81703 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81709 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81707 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81485 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81487 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81489 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81493 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81495 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81497 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81499 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81503 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81505 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81507 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81509 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81511 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81513 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81515 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81519 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81521 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81525 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81527 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81529 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81531 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81533 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81535 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81537 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81541 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81547 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81549 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81551 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81059 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81057 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81055 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81067 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81065 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81063 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81071 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81073 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81081 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81079 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81077 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81085 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81087 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81089 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81099 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81097 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81095 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81093 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81103 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81107 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81111 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81113 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81115 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81117 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81119 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81121 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81123 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81125 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81127 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81129 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81131 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81133 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81135 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81137 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81139 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81141 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81145 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81147 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81151 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81153 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81155 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81157 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81159 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81161 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81163 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80869 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80867 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80873 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80875 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80879 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80905 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80903 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80901 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80899 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80897 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80895 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80893 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80891 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80889 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80887 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80885 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80883 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80909 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80919 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80917 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80915 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80913 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80923 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80925 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80927 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80929 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80931 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80933 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80935 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80937 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80939 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80941 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80943 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80945 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80961 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80959 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80957 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80955 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80953 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80951 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80971 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80969 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80967 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 80965 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80975 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80979 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80981 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80983 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80985 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80987 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80991 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80993 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80995 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 80997 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 80999 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81001 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81003 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81005 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81007 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81009 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81011 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81013 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81015 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81017 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81019 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81021 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81023 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81025 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81027 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81029 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81031 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81033 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81035 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81037 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81039 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81041 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81043 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81045 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 466409 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81215 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81217 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81223 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81225 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81227 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81229 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81231 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81233 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81235 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81237 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81239 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81241 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81243 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81263 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81261 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81259 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81257 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81255 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81253 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81251 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81249 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81267 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81269 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81271 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81273 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81275 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81277 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81279 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81281 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81309 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81307 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81305 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81303 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81301 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81299 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81297 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81295 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81293 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81291 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81289 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81287 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81313 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81315 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81317 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81319 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81325 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81327 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81329 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81331 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81335 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81337 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81341 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81343 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81347 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81355 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81353 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81351 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81369 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81367 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81365 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81363 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81361 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 1
warning: CDS feature on line 81359 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81167 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81169 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81171 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81173 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81177 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81181 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81183 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81185 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81187 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81189 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81191 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81193 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81197 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81199 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81203 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81205 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81207 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 2
warning: CDS feature on line 81209 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0
warning: CDS feature on line 81211 in file "/home/sam/gitrepos/urol-e5/timeseries_molecular/E-Peve/data/intermediate.gff" has the wrong phase . -> correcting it to 0